View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4458_low_56 (Length: 227)

Name: NF4458_low_56
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4458_low_56
NF4458_low_56
[»] scaffold0197 (2 HSPs)
scaffold0197 (146-227)||(29341-29422)
scaffold0197 (31-100)||(29471-29540)
[»] chr4 (2 HSPs)
chr4 (146-227)||(16313204-16313285)
chr4 (31-100)||(16313331-16313400)
[»] chr3 (2 HSPs)
chr3 (146-227)||(36437775-36437856)
chr3 (31-100)||(36437902-36437971)
[»] chr6 (2 HSPs)
chr6 (146-227)||(5859463-5859544)
chr6 (31-100)||(5859590-5859659)


Alignment Details
Target: scaffold0197 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 29422 - 29341
Alignment:
Q  146 atttccctcaaaaagttcgccgccgccgccgtaaaacaattgtcgaacaaaattcgcgtttgggttggttctccggcgaaca 227  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29422 atttccctcaaaaagttcgccgccgccgccgtcaaacaattgtcgaacaaaattcgcgtttgggttggttctccggcgaaca 29341  T

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Target: scaffold0197; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 29540 - 29471
Alignment:
Q  31 ttccctcacttttcctctcaaatccagaaacacaaacccagcaatacaaatgctcctttcctctcaattc 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29540 ttccctcactttttctctcaaatccagaaacacaaacccagcaatacaaatgctcctttcctctcaattc 29471  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 16313285 - 16313204
Alignment:
Q  146 atttccctcaaaaagttcgccgccgccgccgtaaaacaattgtcgaacaaaattcgcgtttgggttggttctccggcgaaca 227  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16313285 atttccctcaaaaagttcgcagccgccgccgtaaaacaattgtcgaacaaaattcgcgtttgggttggttctccggcgaaca 16313204  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 16313400 - 16313331
Alignment:
Q  31 ttccctcacttttcctctcaaatccagaaacacaaacccagcaatacaaatgctcctttcctctcaattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16313400 ttccctcacttttcctctcaaatccagaaacacaaacccagcaatacaaatgctcctttcctctcaattc 16313331  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 36437856 - 36437775
Alignment:
Q  146 atttccctcaaaaagttcgccgccgccgccgtaaaacaattgtcgaacaaaattcgcgtttgggttggttctccggcgaaca 227  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36437856 atttccctcaaaaagttcgcagccgccgccgtaaaacaattgtcgaacaaaattcgcgtttgggttggttctccggcgaaca 36437775  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 36437971 - 36437902
Alignment:
Q  31 ttccctcacttttcctctcaaatccagaaacacaaacccagcaatacaaatgctcctttcctctcaattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36437971 ttccctcacttttcctctcaaatccagaaacacaaacccagcaatacaaatgctcctttcctctcaattc 36437902  T

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Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 146 - 227
Target Start/End: Complemental strand, 5859544 - 5859463
Alignment:
Q  146 atttccctcaaaaagttcgccgccgccgccgtaaaacaattgtcgaacaaaattcgcgtttgggttggttctccggcgaaca 227  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5859544 atttccctcaaaaagttagcagccgccgccgtaaaacaattgtcgaacaaaattcgcgtttgggttggttctccggcgaaca 5859463  T

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Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 5859659 - 5859590
Alignment:
Q  31 ttccctcacttttcctctcaaatccagaaacacaaacccagcaatacaaatgctcctttcctctcaattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5859659 ttccctcacttttcctctcaaatccagaaacacaaacccagcaatacaaatgctcatttcctctcaattc 5859590  T

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