View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_57 (Length: 227)
Name: NF4458_low_57
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_57 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 11760681 - 11760464
Alignment:
| Q |
10 |
tacactttgttaaggcgttacaagtttttattcattggtgctatatatgtaagatgcaattataatggtatgtttactgaaactgcaaaattttagatgc |
109 |
Q |
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| T |
11760681 |
tacactttgttaaggcgttacaagtttttattcattggtgctatatatgtaagatgcaattataatggtatgtttactgaaactgcaaaattttagatgc |
11760582 |
T |
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| Q |
110 |
tataagaatgtacagaaaaacttataccacaagaaattgtagatggttggatgaaaacactcgaactctagcacctcctgcaccatccattccatagcca |
209 |
Q |
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| T |
11760581 |
tataagaatgtacagaaaaacttataccacaagaaattgtagatggttggatgaaaacactcgaactctagcacctcctgcaccatccattccatagcca |
11760482 |
T |
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| Q |
210 |
ccacttcgcatctactgt |
227 |
Q |
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| T |
11760481 |
ccacttcgcatctactgt |
11760464 |
T |
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