View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_58 (Length: 225)
Name: NF4458_low_58
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 50557883 - 50558073
Alignment:
| Q |
19 |
catcaaaccacacatagaaaaccttccaattcaaagaaaacaatttataaaattactgaaagaaaaaataacggacattttgaaagacccaatggaatgg |
118 |
Q |
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| T |
50557883 |
catcaaaccacacatagaaaaccttccaattcaaagaaaacaatttataaaattactgaaagaaaaaataacggacattttgaaagacccaatggaatgg |
50557982 |
T |
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| Q |
119 |
aaaatctaaccttattactatatttttcatgtggaacaggaaccccccacttcagatctctagttatacagcgtcgctctaatccatctct |
209 |
Q |
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| T |
50557983 |
aaaatctaaccttattactatatttttcatgtggaacaggaaccccccacttcagatctctagttatacagcgtcgctctaatccatctct |
50558073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 32 - 205
Target Start/End: Original strand, 50568052 - 50568219
Alignment:
| Q |
32 |
atagaaaaccttccaattcaaagaaaacaatttataaaattactgaaagaaaaaataacggacattttgaaagacccaatggaatggaaaatctaacctt |
131 |
Q |
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| T |
50568052 |
atagaaaaccttccaatttaaagaaaatcatttataaaattactgaatg-aaaaataaatgacattttgaaagacc-----aaatggaaaagctaacctt |
50568145 |
T |
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| Q |
132 |
attactatatttttcatgtggaacaggaaccccccacttcagatctctagttatacagcgtcgctctaatccat |
205 |
Q |
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| T |
50568146 |
gttactgcaattttcattcggaacagaaacccgccacttcagatctctggtaatacagcgtcgctctaatccat |
50568219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 29770208 - 29770360
Alignment:
| Q |
19 |
catcaaaccacacatagaaaaccttccaattcaaagaaaacaatttataaaattactgaaagaaaaaataacggacattttgaaagacccaatggaatgg |
118 |
Q |
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|||||||||| |||||||| ||||||||||| |||||| | |||| |||||| |||| |||||| ||| ||||||||||||||||||| || | |
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| T |
29770208 |
catcaaaccaaacatagaacaccttccaatttaaagaatgtagttta--aaattagtgaatgaaaaac-aaccgacattttgaaagacccaaagg----g |
29770300 |
T |
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| Q |
119 |
aaaatctaaccttattactatatttttcatgtggaacaggaaccccccacttcagatctct |
179 |
Q |
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|||| || ||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29770301 |
aaaa-cttaccttgtcactgtatttttcatgtggaacaggaaccccccacttcagatctct |
29770360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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