View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_59 (Length: 214)
Name: NF4458_low_59
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 14864751 - 14864938
Alignment:
| Q |
17 |
aactgcaaggattgtcaagcaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatgga |
116 |
Q |
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| T |
14864751 |
aactgcaaggattgtcaagaaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagctgccaaatccatgga |
14864850 |
T |
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| Q |
117 |
ttcgattttgcgggaaagaagttccacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgtctctgctcc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
14864851 |
ttcgattttgcgggaaagaagttccacaataaaagaatcctgaagagccttgtcaaagaaagtctgcaaatttgcctgcctctgctcc |
14864938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 15353900 - 15353720
Alignment:
| Q |
24 |
aggattgtcaagcaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgatt |
123 |
Q |
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||||||||||| ||| |||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| || | |||||||||||||||||| | |
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| T |
15353900 |
aggattgtcaaccaagctaccttcggcaacaggctgcatgtgatcaacctgagacaatcgccttttcttattataagcttccaaatccatggattcgaat |
15353801 |
T |
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| Q |
124 |
ttgcgggaaagaagttccacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgtctctgctcc |
204 |
Q |
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| T |
15353800 |
ttgccggaaagaagttcaacaataaaagaatcctgaagagccttctcaaagaagttctgcaaatttgtctgcctcttctcc |
15353720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 15373306 - 15373472
Alignment:
| Q |
24 |
aggattgtcaagcaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgatt |
123 |
Q |
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| T |
15373306 |
aggattgtcaaccaagctaccttcggcaacaggctgcatgtgatcaacctgagacaatcgccttttcttattataagctgccaaatccatggattcgaat |
15373405 |
T |
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| Q |
124 |
ttgcgggaaagaagttccacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttg |
190 |
Q |
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| T |
15373406 |
tatccggaaagaagttcaacaataaaagaatcctgaagagccttttcaaagaagttctgcaaatttg |
15373472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 15322720 - 15322900
Alignment:
| Q |
24 |
aggattgtcaagcaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgatt |
123 |
Q |
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| T |
15322720 |
aggatggtcaaccaatctaccttcggcaacaagctgcatctgatcaacctgagacaatcgccttttcttattataagctgccaaatccttggattcgaat |
15322819 |
T |
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| Q |
124 |
ttgcgggaaagaagttccacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgtctctgctcc |
204 |
Q |
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| T |
15322820 |
ttgccggaaagaagttcaacaataaaagaatcctgaagagccttctcaaagaagttctgcaaatttgtctgcctcttctcc |
15322900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 15323762 - 15323596
Alignment:
| Q |
24 |
aggattgtcaagcaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgatt |
123 |
Q |
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||||||||||| ||| |||||||| ||||||| || ||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | |
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| T |
15323762 |
aggattgtcaaccaagctaccttcggcaacaggttgcatgtgatcaacctgagacaatcgccttttcttattataagctgccaaatccatggatccgaat |
15323663 |
T |
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| Q |
124 |
ttgcgggaaagaagttccacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttg |
190 |
Q |
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||| |||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||||||| |
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| T |
15323662 |
ttgtcggaaagaagttcaacaataaaagaatcttgaagaaccttctcaaagaagttctgcaaatttg |
15323596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 54 - 204
Target Start/End: Complemental strand, 15374071 - 15373921
Alignment:
| Q |
54 |
aggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgattttgcgggaaagaagttccacaataaaagaa |
153 |
Q |
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| T |
15374071 |
aggctgcatgtgatcaacctgagacaatcgccttttcttattataagctgccaaatccatggattcgaattttccggaaagaagttcaacaataaaagaa |
15373972 |
T |
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| Q |
154 |
tcctgaagagccttctcaaagaaagtctgcaaatttgcctgtctctgctcc |
204 |
Q |
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| T |
15373971 |
tcttgaagaggcttctcaaagaagttctgcaaatttgtctgcctcttctcc |
15373921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 15352894 - 15353057
Alignment:
| Q |
41 |
taccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgattttgcgggaaagaagttc |
140 |
Q |
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|||||||| ||||| |||| || ||||||| | ||||||||||||||||||||||| || ||||||||| ||||||||| ||||| |||||||||||| |
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| T |
15352894 |
taccttcggcaacaagctgcatttgatcaacataagacaatcgccttttcttattataagcagccaaatccttggattcgaatttgccggaaagaagttc |
15352993 |
T |
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| Q |
141 |
cacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgtctctgctcc |
204 |
Q |
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| T |
15352994 |
aacaataaaagaatcctgaagagccttctcaaagaagttctgcaaatttgtctgcctcttctcc |
15353057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 35146351 - 35146171
Alignment:
| Q |
24 |
aggattgtcaagcaaaataccttcgacaacaggctgtatgcgatcaacctgagacaatcgccttttcttattatcagatgccaaatccatggattcgatt |
123 |
Q |
| |
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||||||||||| ||| |||||||| |||||||||| | |||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||| |
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| T |
35146351 |
aggattgtcaaccaagctaccttcggcaacaggctgcacctgatcaacctgaggcaatcgccttttcttattataagctgccaaatccatggattcaatt |
35146252 |
T |
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| Q |
124 |
ttgcgggaaagaagttccacaataaaagaatcctgaagagccttctcaaagaaagtctgcaaatttgcctgtctctgctcc |
204 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| ||| |||| |||| |
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| T |
35146251 |
ttgcgggaaagaagttcaacaataaaagaatcttgaagagccttctcaaagaagttctgcaaatttgtctgcctcttctcc |
35146171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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