View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4458_low_8 (Length: 545)
Name: NF4458_low_8
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4458_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 14 - 269
Target Start/End: Original strand, 925033 - 925287
Alignment:
| Q |
14 |
agagggagggccgcgacccactagaagaaaatatttgatatggaaattattaaattaccctgatttgttttaaaaataaaattacaagagttatacatca |
113 |
Q |
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| T |
925033 |
agagggagggccgcgacccgatagaagaaaatatttcatatggaaattattaaattaccctgatttgttttaaaaataaaattacaagagttatacatca |
925132 |
T |
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| Q |
114 |
tatttagtggacaagtaatgaatttgttttggctataatgatagttaaaaagcttttaatatttgatatatgcatatagttgaaaaattatccaatagat |
213 |
Q |
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| T |
925133 |
tatttagtagacaagtaatgaatttgttttgg-tctaatgatagttaaaaagcttttaatatttgatatatgcatatagttgaaaaattatccaatagat |
925231 |
T |
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| Q |
214 |
ttcatgagatattgaaaaatcatagataggaagtgattttgttgttttgtgtgaat |
269 |
Q |
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| T |
925232 |
ttcatgagatattgaaaaatcatagataggaagtgattttgttgttttgtgtgaat |
925287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 269 - 523
Target Start/End: Original strand, 925329 - 925584
Alignment:
| Q |
269 |
tgggtgggtttgtagagagcagaaacagaatggataaggcatcaccannnnnnngtatacatttgatcttcctaggacgcatgttcaaatgtatatgcga |
368 |
Q |
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| T |
925329 |
tgggtgggtttgtagagagcagaaacagaatggataaggcatcaccatttttttgtatacatttgatcttcctaggacgcatgttcaaatgtatatgcga |
925428 |
T |
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| Q |
369 |
agtatctcatat-------tagtcatgtacaatatgnnnnnnngttagaggatgtaaaatctgtttaaagnnnnnnngaaattacatacatatacatatg |
461 |
Q |
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| T |
925429 |
agtatctcatattagtcaatagtcatgtacaatatgtttttttgttagaggatgtaaaatctgtttaaagaaaaaaagaaattac------atacatatg |
925522 |
T |
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| Q |
462 |
agtggagcatcgttactttaaaacgtacacatacatatactttttcaattttaaagcatcta |
523 |
Q |
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| T |
925523 |
agtggagcatcgttactttaaaacgtacacatacatatactttttcaattttaaagcatcta |
925584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 926968 - 927009
Alignment:
| Q |
200 |
attatccaatagatttcatgagatattgaaaaatcatagata |
241 |
Q |
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| T |
926968 |
attatccaatggatttcatgagatattgaaaaattatagata |
927009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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