View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4458_low_9 (Length: 537)

Name: NF4458_low_9
Description: NF4458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4458_low_9
NF4458_low_9
[»] chr4 (9 HSPs)
chr4 (13-208)||(36087874-36088070)
chr4 (79-113)||(313657-313691)
chr4 (79-113)||(1638517-1638551)
chr4 (79-113)||(22128345-22128379)
chr4 (79-113)||(34557253-34557287)
chr4 (80-113)||(6553875-6553908)
chr4 (80-113)||(32175770-32175803)
chr4 (80-113)||(46286262-46286295)
chr4 (79-111)||(18714972-18715004)
[»] chr6 (6 HSPs)
chr6 (80-113)||(9060163-9060196)
chr6 (79-113)||(12351619-12351653)
chr6 (79-113)||(33547618-33547652)
chr6 (80-113)||(5360482-5360515)
chr6 (80-113)||(9885316-9885349)
chr6 (79-111)||(28668172-28668204)
[»] chr1 (8 HSPs)
chr1 (80-113)||(9882073-9882106)
chr1 (80-113)||(46865316-46865349)
chr1 (79-113)||(12720881-12720915)
chr1 (79-113)||(16913610-16913644)
chr1 (79-113)||(41063269-41063303)
chr1 (79-112)||(6775959-6775992)
chr1 (80-113)||(17661123-17661156)
chr1 (79-111)||(38531205-38531237)
[»] scaffold0284 (1 HSPs)
scaffold0284 (79-113)||(1552-1586)
[»] chr8 (5 HSPs)
chr8 (79-113)||(2265411-2265445)
chr8 (79-113)||(9631474-9631508)
chr8 (79-113)||(26399040-26399074)
chr8 (79-113)||(41527733-41527767)
chr8 (80-113)||(19256283-19256316)
[»] chr7 (4 HSPs)
chr7 (79-113)||(1907427-1907461)
chr7 (79-113)||(11890180-11890214)
chr7 (80-110)||(38090336-38090366)
chr7 (79-113)||(48933208-48933242)
[»] chr5 (5 HSPs)
chr5 (83-113)||(10420285-10420315)
chr5 (79-113)||(16121872-16121906)
chr5 (79-113)||(20187974-20188008)
chr5 (79-113)||(23974609-23974643)
chr5 (80-113)||(13620160-13620193)
[»] chr3 (6 HSPs)
chr3 (79-113)||(17582334-17582368)
chr3 (79-113)||(20761983-20762017)
chr3 (79-113)||(21020133-21020167)
chr3 (79-113)||(28390041-28390075)
chr3 (79-113)||(46012761-46012795)
chr3 (80-113)||(5565791-5565824)
[»] chr2 (3 HSPs)
chr2 (83-113)||(13134653-13134683)
chr2 (80-113)||(8430365-8430398)
chr2 (80-113)||(22192248-22192281)
[»] scaffold0087 (1 HSPs)
scaffold0087 (80-113)||(37820-37853)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 8e-81; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 36087874 - 36088070
Alignment:
Q  13 catcatcaacttgatcatcacttctctacc-tgttatggctaacgatccacctgtctcgtgattgctgaatttgtgagggattttattttttccgtcact 111  Q
    ||||||||||||||||||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36087874 catcatcaacttgatcatcacttcttttcccttttatggctaacgatccacctgtctcgtgattgctgaatttgtgagggattttattttttccgtcact 36087973  T
Q  112 aaaacatactgattcatctcgctgcgtaatcaatccctacgagacttataataatacagtaaaagacttgctgcaatttggcaatggtattttctga 208  Q
    |||||||||||||||||| ||||||  ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36087974 aaaacatactgattcatcacgctgcacaatcaatccgtacgtggcttataataatacagtaaaagacttgctgcaatttggcaatggtattttctga 36088070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 313657 - 313691
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||| ||||||||||||||||||||||||||||    
T  313657 gaatttatgagggattttattttttccgtcactaa 313691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 1638517 - 1638551
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||| ||||||||||||||||||||||||||||||    
T  1638517 gaatatgtgagggattttattttttccgtcactaa 1638551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 22128379 - 22128345
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| |||||||||||||||||||||||    
T  22128379 gaatttgtgagagattttattttttccgtcactaa 22128345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 34557253 - 34557287
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||| ||||||||||||||||||||||||    
T  34557253 gaatttgtgaaggattttattttttccgtcactaa 34557287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 6553875 - 6553908
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    ||||| ||||||||||||||||||||||||||||    
T  6553875 aatttatgagggattttattttttccgtcactaa 6553908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 32175803 - 32175770
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| ||||||||||||||||||||||    
T  32175803 aatttgtgaggaattttattttttccgtcactaa 32175770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 46286295 - 46286262
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| ||||||||||||||||||||||    
T  46286295 aatttgtgaggaattttattttttccgtcactaa 46286262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 18714972 - 18715004
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcact 111  Q
    |||||||||||| ||||||||||||||||||||    
T  18714972 gaatttgtgaggaattttattttttccgtcact 18715004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 9060163 - 9060196
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||||||||||||||||||||||||||    
T  9060163 aatttgtgagggattttattttttccgtcactaa 9060196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 12351653 - 12351619
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||||| ||||||||||||||||||||||    
T  12351653 gaatttgtgaggaattttattttttccgtcactaa 12351619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 33547618 - 33547652
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||||||||||||||||||||||| ||||    
T  33547618 gaatttgtgagggattttattttttccgtccctaa 33547652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 5360482 - 5360515
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| ||||||||||||||||||||||    
T  5360482 aatttgtgaggaattttattttttccgtcactaa 5360515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 9885316 - 9885349
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||| |||||||||||||||||||||||    
T  9885316 aatttgtgagagattttattttttccgtcactaa 9885349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 28668172 - 28668204
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcact 111  Q
    |||||||||||| ||||||||||||||||||||    
T  28668172 gaatttgtgaggaattttattttttccgtcact 28668204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 9882106 - 9882073
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||||||||||||||||||||||||||    
T  9882106 aatttgtgagggattttattttttccgtcactaa 9882073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 46865316 - 46865349
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||||||||||||||||||||||||||    
T  46865316 aatttgtgagggattttattttttccgtcactaa 46865349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 12720881 - 12720915
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||||| ||||||||||||||||||||||    
T  12720881 gaatttgtgaggaattttattttttccgtcactaa 12720915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 16913644 - 16913610
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||||| ||||||||||||||||||||||    
T  16913644 gaatttgtgaggaattttattttttccgtcactaa 16913610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 41063269 - 41063303
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||| ||||||||||||||||||||||||||||||    
T  41063269 gaatatgtgagggattttattttttccgtcactaa 41063303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 6775959 - 6775992
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcacta 112  Q
    ||||||||||||||||||||||||||| ||||||    
T  6775959 gaatttgtgagggattttattttttccatcacta 6775992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 17661123 - 17661156
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| ||||||||||||||||||||||    
T  17661123 aatttgtgaggaattttattttttccgtcactaa 17661156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 38531237 - 38531205
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcact 111  Q
    |||||||||||| ||||||||||||||||||||    
T  38531237 gaatttgtgaggaattttattttttccgtcact 38531205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 1586 - 1552
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||| ||||||||||||||||||||||||||||    
T  1586 gaatttatgagggattttattttttccgtcactaa 1552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 2265445 - 2265411
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||| ||||||||||||||||||||||||    
T  2265445 gaatttgtgaaggattttattttttccgtcactaa 2265411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 9631474 - 9631508
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||||| ||||||||||||||||||||||    
T  9631474 gaatttgtgaggaattttattttttccgtcactaa 9631508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 26399074 - 26399040
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| |||||||||||||||||||||||    
T  26399074 gaatttgtgagagattttattttttccgtcactaa 26399040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 41527767 - 41527733
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||| ||||||||||||||||||||||||||||    
T  41527767 gaatttatgagggattttattttttccgtcactaa 41527733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 19256283 - 19256316
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| ||||||||||||||||||||||    
T  19256283 aatttgtgaggaattttattttttccgtcactaa 19256316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 1907427 - 1907461
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||| ||||||||||||||||||||||||||||||    
T  1907427 gaatatgtgagggattttattttttccgtcactaa 1907461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 11890214 - 11890180
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||| ||||||||||||||||||||||||||||    
T  11890214 gaatttatgagggattttattttttccgtcactaa 11890180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 110
Target Start/End: Original strand, 38090336 - 38090366
Alignment:
Q  80 aatttgtgagggattttattttttccgtcac 110  Q
    |||||||||||||||||||||||||||||||    
T  38090336 aatttgtgagggattttattttttccgtcac 38090366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 48933208 - 48933242
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||||| ||||||||||||||||||||||    
T  48933208 gaatttgtgaggaattttattttttccgtcactaa 48933242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 113
Target Start/End: Complemental strand, 10420315 - 10420285
Alignment:
Q  83 ttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||||||||||||||||||||||||    
T  10420315 ttgtgagggattttattttttccgtcactaa 10420285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 16121906 - 16121872
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||||| ||||||||||||||||||||||    
T  16121906 gaatttgtgaggaattttattttttccgtcactaa 16121872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 20188008 - 20187974
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||||| ||||||||||||||||||||||    
T  20188008 gaatttgtgaggaattttattttttccgtcactaa 20187974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 23974643 - 23974609
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| |||||||||||||||||||||||    
T  23974643 gaatttgtgagagattttattttttccgtcactaa 23974609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 13620193 - 13620160
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||| |||||||||||||||||||||||    
T  13620193 aatttgtgagagattttattttttccgtcactaa 13620160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 17582368 - 17582334
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||||| ||||||||||||||||||||||    
T  17582368 gaatttgtgaggaattttattttttccgtcactaa 17582334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 20762017 - 20761983
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| |||||||||||||||||||||||    
T  20762017 gaatttgtgagagattttattttttccgtcactaa 20761983  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 21020133 - 21020167
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| |||||||||||||||||||||||    
T  21020133 gaatttgtgagagattttattttttccgtcactaa 21020167  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 28390041 - 28390075
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| |||||||||||||||||||||||    
T  28390041 gaatttgtgagagattttattttttccgtcactaa 28390075  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 46012795 - 46012761
Alignment:
Q  79 gaatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| |||||||||||||||||||||||    
T  46012795 gaatttgtgagagattttattttttccgtcactaa 46012761  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 5565791 - 5565824
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||| |||||||||||||||||||||||    
T  5565791 aatttgtgagagattttattttttccgtcactaa 5565824  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 113
Target Start/End: Complemental strand, 13134683 - 13134653
Alignment:
Q  83 ttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||||||||||||||||||||||||    
T  13134683 ttgtgagggattttattttttccgtcactaa 13134653  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 8430365 - 8430398
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| ||||||||||||||||||||||    
T  8430365 aatttgtgaggaattttattttttccgtcactaa 8430398  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 22192248 - 22192281
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    |||||||||| |||||||||||||||||||||||    
T  22192248 aatttgtgagagattttattttttccgtcactaa 22192281  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 37853 - 37820
Alignment:
Q  80 aatttgtgagggattttattttttccgtcactaa 113  Q
    ||||||||||| ||||||||||||||||||||||    
T  37853 aatttgtgaggaattttattttttccgtcactaa 37820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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