View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4459-Insertion-1 (Length: 973)
Name: NF4459-Insertion-1
Description: NF4459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4459-Insertion-1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 440 - 970
Target Start/End: Complemental strand, 43200429 - 43199911
Alignment:
| Q |
440 |
gttgggagacctaaagtgatgattgtagtaaccttatccttagactaatttgtgaaggaattccacaattttttatgc----tacgctgttttaccctaa |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
43200429 |
gttgggagacctaaagtgatgattgtagtaaccttatccttagactaatttgtgaaggaattccactattttttatgcattgtatgctgttttaccctaa |
43200330 |
T |
|
| Q |
536 |
nnnnnnnataaaataaacccttctatcgacattttagtgaacaaacgacatgatattt-gtaatatgtatgtaaagaattcttatatgctttatttggtt |
634 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
43200329 |
ttttcttatgaaataaacccttctatccgcattttagtgaacaaacgacatgacattttgtaatatgtatgcaaagaattcttatatgctatatttggtt |
43200230 |
T |
|
| Q |
635 |
atccaacacatgcatattctggcatccaaaacaagaaggtttaaagtgggatgaaccatgtatctgaacgtatacattcgaatcattatcattattaatt |
734 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
43200229 |
atccaacacatgcatattctg-catccaaaacaaga-ggtttaaagtgg-atgaaacatgtatctggacgtatacattagaatcattatcattattaatt |
43200133 |
T |
|
| Q |
735 |
aacaattgccatctcttaattcctatcaacctttagatcccattattaattttaccaagataattaaagtagtacatgcattagagcacaatatacttac |
834 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |
|
|
| T |
43200132 |
aacaattgccatctcttaattcctatcaacctttagatcccattattaattttacc----------aagtagtacatgcattagagaaccatatacttac |
43200043 |
T |
|
| Q |
835 |
aatgggtacttggtacaggaatagctagcagagtaaagtatggggctaaatcagattaatccaaatcaaaactgaaagattatactcctttctagtacct |
934 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43200042 |
aat-ggtacttggtaca-gaatagctagcagagtaaagtat-gggctaaatcagattaatccaaatcaaaactgaaagattatactcc-ttctagtacct |
43199947 |
T |
|
| Q |
935 |
taacaaattaaattacacccaaatatcgactaggct |
970 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
43199946 |
taacaaattaaattacacccaaatatcgactaggct |
43199911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 43200873 - 43200490
Alignment:
| Q |
8 |
aaaatataatagaagattactcatgtgttctgtcttccaattactcgagacaaacagtgtgtcggttcggtatataataatcaaagggctctaggttcca |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43200873 |
aaaaaataatagaagattactcatgtgttctgtcttccaattactcgagacaaacagtgtgtcggttcggtatataataatcaaagggctctaggttcca |
43200774 |
T |
|
| Q |
108 |
agttaaaaagaaagctgcaaagttactgctataaaatcacttggatcttaaaaaatgacgtggaaaaatataatcactagagaacacaggtttttagatg |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43200773 |
agttaaa--gaaagctgcaaagttactgctataaaatcacttggatcttaaaaaatgacgtggaaaaatataatcactatagaacacaggtttttagatg |
43200676 |
T |
|
| Q |
208 |
cataatcagaatgtgccnnnnnnntgcgcataatcagaagtatcttcaaaattaaaagatgctcaacctcgttcttcaaagtaaatgaaaac-------- |
299 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43200675 |
cataatcagaatgtgccaaaaaaatgcgcataatcagaagtatcttcaaaattaaaagatgctcaacctcgttcttcaaagtaaatgaaaacggcaattt |
43200576 |
T |
|
| Q |
300 |
------ggcagtttggtgtgcatgtaggggtctggaatagggttggcctaatatatgagatttaaaacaaattttaatatatgaga |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
43200575 |
aaaaaaggcagtttggtgtgcatgtaggggtctggaataggattggcctaatatacgagatttaaaataaattttaatatatgaga |
43200490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University