View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4459-Insertion-11 (Length: 136)

Name: NF4459-Insertion-11
Description: NF4459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4459-Insertion-11
NF4459-Insertion-11
[»] chr1 (9 HSPs)
chr1 (33-100)||(31833892-31833959)
chr1 (32-98)||(47028930-47028997)
chr1 (33-91)||(41955957-41956016)
chr1 (37-97)||(12172954-12173015)
chr1 (34-98)||(46757305-46757370)
chr1 (37-98)||(42442081-42442143)
chr1 (39-97)||(43268679-43268739)
chr1 (35-91)||(8463040-8463097)
chr1 (35-98)||(26990600-26990664)
[»] chr7 (9 HSPs)
chr7 (35-99)||(46691918-46691983)
chr7 (37-91)||(49035928-49035983)
chr7 (36-99)||(22197666-22197730)
chr7 (36-99)||(22240091-22240155)
chr7 (35-94)||(41702867-41702927)
chr7 (37-99)||(36615874-36615936)
chr7 (37-91)||(30655671-30655727)
chr7 (35-103)||(43397634-43397702)
chr7 (33-95)||(32678942-32679005)
[»] chr3 (14 HSPs)
chr3 (32-100)||(8431484-8431552)
chr3 (34-101)||(43073115-43073182)
chr3 (37-99)||(28934808-28934870)
chr3 (37-97)||(31525363-31525424)
chr3 (35-97)||(10454279-10454342)
chr3 (35-101)||(53349397-53349464)
chr3 (35-97)||(44656298-44656360)
chr3 (33-101)||(46750208-46750275)
chr3 (37-91)||(20701152-20701206)
chr3 (33-91)||(42881885-42881943)
chr3 (39-91)||(28956952-28957005)
chr3 (39-97)||(9358823-9358883)
chr3 (39-97)||(47820897-47820957)
chr3 (67-98)||(55166925-55166956)
[»] chr2 (4 HSPs)
chr2 (32-100)||(38908666-38908734)
chr2 (33-103)||(41419611-41419682)
chr2 (34-97)||(14732409-14732473)
chr2 (39-98)||(41378272-41378333)
[»] chr5 (6 HSPs)
chr5 (33-101)||(25539815-25539883)
chr5 (39-91)||(2292168-2292222)
chr5 (34-102)||(3677861-3677929)
chr5 (33-97)||(22887211-22887275)
chr5 (37-99)||(819201-819263)
chr5 (64-97)||(23173074-23173107)
[»] chr8 (8 HSPs)
chr8 (37-91)||(10124866-10124922)
chr8 (37-98)||(40930902-40930962)
chr8 (35-98)||(5200552-5200616)
chr8 (38-101)||(7845076-7845138)
chr8 (35-98)||(24200691-24200754)
chr8 (39-97)||(30836212-30836272)
chr8 (45-90)||(13959301-13959347)
chr8 (37-97)||(25829338-25829399)
[»] chr6 (3 HSPs)
chr6 (39-98)||(10246909-10246969)
chr6 (39-98)||(15859092-15859154)
chr6 (66-97)||(6575721-6575752)
[»] chr4 (4 HSPs)
chr4 (32-89)||(47571638-47571694)
chr4 (39-98)||(32183274-32183336)
chr4 (32-91)||(16572074-16572134)
chr4 (64-96)||(42390874-42390906)


Alignment Details
Target: chr1 (Bit Score: 60; Significance: 5e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 31833959 - 31833892
Alignment:
Q  33 aaatacaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaaaaccaccccaa 100  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31833959 aaatacaagggaaaatcggttgccacataacaccggctcgaacaaaaaccccttaaaaaccaccccaa 31833892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 47028997 - 47028930
Alignment:
Q  32 taaatacaaggggaaatcggttgccacataat-accggctcgaacaaaaaccccttaaaaaccacccc 98  Q
    ||||||||||||||||||||||||| || ||  ||||||||||||||||||||||||||||| |||||    
T  47028997 taaatacaaggggaaatcggttgccgcaaaaacaccggctcgaacaaaaaccccttaaaaactacccc 47028930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 41955957 - 41956016
Alignment:
Q  33 aaatacaaggggaaatcggttgcca-cataataccggctcgaacaaaaaccccttaaaaa 91  Q
    |||||||||||||||||||||||||  |||| ||||||||||||||||| ||||||||||    
T  41955957 aaatacaaggggaaatcggttgccataataacaccggctcgaacaaaaatcccttaaaaa 41956016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 12173015 - 12172954
Alignment:
Q  37 acaaggggaaatcggttgccacataat-accggctcgaacaaaaaccccttaaaaaccaccc 97  Q
    ||||||||||||||||||||||| ||  | | ||||||||||||||||||||||||||||||    
T  12173015 acaaggggaaatcggttgccacacaaacatcagctcgaacaaaaaccccttaaaaaccaccc 12172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 46757370 - 46757305
Alignment:
Q  34 aatacaaggggaaatcggttgccaca-taataccggctcgaacaaaaaccccttaaaaaccacccc 98  Q
    |||| |||||||||||| |||||||| ||| ||| |||||||||||||||| ||||||||||||||    
T  46757370 aatataaggggaaatcgattgccacaataacaccagctcgaacaaaaaccctttaaaaaccacccc 46757305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 42442081 - 42442143
Alignment:
Q  37 acaaggggaaatcggttgccac-ataataccggctcgaacaaaaaccccttaaaaaccacccc 98  Q
    |||| ||||||||||||||||  | || |||| ||||||||||||||||||||||||||||||    
T  42442081 acaacgggaaatcggttgccattaaaacaccgactcgaacaaaaaccccttaaaaaccacccc 42442143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 43268679 - 43268739
Alignment:
Q  39 aaggggaaatcggttgccacataat-accggctcgaacaaaaacccc-ttaaaaaccaccc 97  Q
    |||||||||||||||||| || ||  ||||||||||||||||||||| |||||||||||||    
T  43268679 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 43268739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 8463040 - 8463097
Alignment:
Q  35 atacaaggggaaatcggttgccacataatac--cggctcgaacaaaaaccccttaaaaa 91  Q
    ||||||||| ||||||||||||||| || ||  ||||||||||||||||||||||||||    
T  8463040 atacaagggaaaatcggttgccacaaaa-acgtcggctcgaacaaaaaccccttaaaaa 8463097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 26990664 - 26990600
Alignment:
Q  35 atacaaggggaaatcggttgccacataat-accggctcgaacaaaaaccccttaaaaaccacccc 98  Q
    ||||||||| |||||| ||||| || ||  |||||||| |||||||| |||||||||||||||||    
T  26990664 atacaagggaaaatcgattgccgcacaagcaccggctcaaacaaaaatcccttaaaaaccacccc 26990600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 2e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 46691918 - 46691983
Alignment:
Q  35 atacaaggggaaatcggttgccacataat-accggctcgaacaaaaaccccttaaaaaccacccca 99  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  46691918 atacaaggggaaatcggttgccacataaacaccggctcgaacaaaaaccccttaaaaaccacccca 46691983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 49035928 - 49035983
Alignment:
Q  37 acaaggggaaatcggttgccacat-aataccggctcgaacaaaaaccccttaaaaa 91  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||    
T  49035928 acaaggggaaatcggttgccacataaacaccggttcgaacaaaaaccccttaaaaa 49035983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 22197730 - 22197666
Alignment:
Q  36 tacaaggggaaatcggttgccacataataccggctcgaacaaaaacccctta-aaaaccacccca 99  Q
    ||||||||||||||| || ||||| || |||| ||||||||||||||||||| ||||||||||||    
T  22197730 tacaaggggaaatcgattaccacaaaacaccgtctcgaacaaaaaccccttaaaaaaccacccca 22197666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 22240091 - 22240155
Alignment:
Q  36 tacaaggggaaatcggttgccacataataccggctcgaacaaaaacccctt-aaaaaccacccca 99  Q
    ||||||||||||||| || ||||| || |||| |||||||||||||||||| |||||||||||||    
T  22240091 tacaaggggaaatcgattaccacaaaacaccgtctcgaacaaaaaccccttaaaaaaccacccca 22240155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 41702927 - 41702867
Alignment:
Q  35 atacaaggggaaatcggttgccacataat-accggctcgaacaaaaaccccttaaaaacca 94  Q
    |||||||||||| ||||||||| || ||  |||||||||||||||||||||||||||||||    
T  41702927 atacaaggggaagtcggttgccgcacaaacaccggctcgaacaaaaaccccttaaaaacca 41702867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 36615874 - 36615936
Alignment:
Q  37 acaaggggaaatcggttgccacataataccggctcgaacaaaaacccctt-aaaaaccacccca 99  Q
    ||||||||||||||||||||||| ||  || |||||||||||||||| || |||||||||||||    
T  36615874 acaaggggaaatcggttgccaca-aactccagctcgaacaaaaaccctttaaaaaaccacccca 36615936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 30655671 - 30655727
Alignment:
Q  37 acaaggggaaatcggttgc--cacataataccggctcgaacaaaaaccccttaaaaa 91  Q
    |||||||||||||||||||  |||| |||| || |||||||||||||| ||||||||    
T  30655671 acaaggggaaatcggttgccacacaaaatatcgactcgaacaaaaacctcttaaaaa 30655727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 43397702 - 43397634
Alignment:
Q  35 atacaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaaaaccaccccaaaca 103  Q
    |||||| || ||||| ||||||||| || | | |||||||||||||||| | |||||||||||| ||||    
T  43397702 atacaaaggaaaatctgttgccacaaaacaactgctcgaacaaaaacccttaaaaaaccacccctaaca 43397634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 32679005 - 32678942
Alignment:
Q  33 aaatacaaggggaaatcggttgccac-ataataccggctcgaacaaaaaccccttaaaaaccac 95  Q
    ||||||||||  |||||| ||||| | | ||||| |||| ||||||||||||||||||||||||    
T  32679005 aaatacaaggaaaaatcgattgccgctaaaatactggctggaacaaaaaccccttaaaaaccac 32678942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 8e-22; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 8431484 - 8431552
Alignment:
Q  32 taaatacaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaaaaccaccccaa 100  Q
    |||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||    
T  8431484 taaacacaaggggaaatcggttgcaacaaaacaccggctcgaacaaaaaccccttaaaaaccaccccaa 8431552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 43073115 - 43073182
Alignment:
Q  34 aatacaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaaaaccaccccaaa 101  Q
    |||||||||||||||||||||||  | || ||||||||||||||||||||||||||||||||||||||    
T  43073115 aatacaaggggaaatcggttgccttaaaacaccggctcgaacaaaaaccccttaaaaaccaccccaaa 43073182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 28934808 - 28934870
Alignment:
Q  37 acaaggggaaatcggttgccacataataccggctcgaacaaaaacccctt-aaaaaccacccca 99  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||    
T  28934808 acaaggggaaatcggttgccaca-aacaccggctcgaacaaaaaccccttaaaaaaccacccca 28934870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 31525424 - 31525363
Alignment:
Q  37 acaaggggaaatcggttgccacataat-accggctcgaacaaaaaccccttaaaaaccaccc 97  Q
    ||||||||||||||||||||||| ||  | ||||||||||||||||||||||||||||||||    
T  31525424 acaaggggaaatcggttgccacacaaacaacggctcgaacaaaaaccccttaaaaaccaccc 31525363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 97
Target Start/End: Complemental strand, 10454342 - 10454279
Alignment:
Q  35 atacaaggggaaatcggttgccacataata-ccggctcgaacaaaaaccccttaaaaaccaccc 97  Q
    |||||||||||||||||||||||||  | | ||||||| |||||||||||||||||||||||||    
T  10454342 atacaaggggaaatcggttgccacaagaaagccggctcaaacaaaaaccccttaaaaaccaccc 10454279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 53349464 - 53349397
Alignment:
Q  35 atacaaggggaaatcggttgccacataat-accggctcgaacaaaaaccccttaaaaaccaccccaaa 101  Q
    ||||||||| |||||||||||| || ||  |||||||| |||||||||||||||||||||||||||||    
T  53349464 atacaagggaaaatcggttgccgcacaaacaccggctcaaacaaaaaccccttaaaaaccaccccaaa 53349397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 44656298 - 44656360
Alignment:
Q  35 atacaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaaaaccaccc 97  Q
    ||||||||| ||||||||||||| |||| || | |||||||||||| ||||||||||||||||    
T  44656298 atacaagggaaaatcggttgccatataacacagactcgaacaaaaatcccttaaaaaccaccc 44656360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 46750275 - 46750208
Alignment:
Q  33 aaatacaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaaaaccaccccaaa 101  Q
    |||||||| || |||||||||||| || || ||||| ||||||||||| ||||||||||||||||||||    
T  46750275 aaatacaaaggaaaatcggttgccgcaaaacaccggttcgaacaaaaa-cccttaaaaaccaccccaaa 46750208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 20701206 - 20701152
Alignment:
Q  37 acaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaaaa 91  Q
    |||||||||||||| |||||||| ||   ||||||||||||||||||||||||||    
T  20701206 acaaggggaaatcgattgccacacaactacggctcgaacaaaaaccccttaaaaa 20701152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 42881943 - 42881885
Alignment:
Q  33 aaatacaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaaaa 91  Q
    |||||||||||||||||| ||||||||  | |||||||| ||||||||| |||||||||    
T  42881943 aaatacaaggggaaatcgattgccacaatacaccggctcaaacaaaaacgccttaaaaa 42881885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 28957005 - 28956952
Alignment:
Q  39 aaggggaaatcggttgccacataat-accggctcgaacaaaaaccccttaaaaa 91  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  28957005 aaggggaaatcggttgccacacaaacaccggctcgaacaaaaacccctttaaaa 28956952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 9358823 - 9358883
Alignment:
Q  39 aaggggaaatcggttgccacataat-accggctcgaacaaaaacccc-ttaaaaaccaccc 97  Q
    |||||||||||||||||| || ||  ||||||||||||||||||||| |||||||||||||    
T  9358823 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 9358883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 47820957 - 47820897
Alignment:
Q  39 aaggggaaatcggttgccacataat-accggctcgaacaaaaacccc-ttaaaaaccaccc 97  Q
    |||||||||||||||||| || ||  ||||||||||||||||||||| |||||||||||||    
T  47820957 aaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 47820897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 98
Target Start/End: Original strand, 55166925 - 55166956
Alignment:
Q  67 ggctcgaacaaaaaccccttaaaaaccacccc 98  Q
    ||||||||||||||||||||||||||||||||    
T  55166925 ggctcgaacaaaaaccccttaaaaaccacccc 55166956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 2e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 38908734 - 38908666
Alignment:
Q  32 taaatacaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaaaaccaccccaa 100  Q
    |||||||||||| |||||||| |||||| || ||||| |||||||||||||||||||||||||||||||    
T  38908734 taaatacaagggaaaatcggtagccacaaaacaccggttcgaacaaaaaccccttaaaaaccaccccaa 38908666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 41419682 - 41419611
Alignment:
Q  33 aaatacaaggggaaatcggttgccaca-taataccggctcgaacaaaaaccccttaaaaaccaccccaaaca 103  Q
    ||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||| |||||    
T  41419682 aaatacaaggggaaatcggttgccataataacaccgactcgaacaaaaaccccttaaaaaccacccaaaaca 41419611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 14732409 - 14732473
Alignment:
Q  34 aatacaaggggaaatcggttgccacataa-taccggctcgaacaaaaaccccttaaaaaccaccc 97  Q
    |||||||||||||||||||| || || || |||| ||||||||||||||||||||||||||||||    
T  14732409 aatacaaggggaaatcggttaccgcaaaaataccagctcgaacaaaaaccccttaaaaaccaccc 14732473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 41378272 - 41378333
Alignment:
Q  39 aaggggaaatcggttgccaca-taataccggctcgaacaaaaacccc-ttaaaaaccacccc 98  Q
    |||||||||||||||||||||  ||  |||||||||| ||||||||| ||||||||||||||    
T  41378272 aaggggaaatcggttgccacacaaactccggctcgaataaaaacccctttaaaaaccacccc 41378333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 5e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 25539883 - 25539815
Alignment:
Q  33 aaatacaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaaaaccaccccaaa 101  Q
    ||||||||| |||||||||||||||   || | ||||||||||||||||||||||||||||||||||||    
T  25539883 aaatacaagaggaaatcggttgccatcaaacatcggctcgaacaaaaaccccttaaaaaccaccccaaa 25539815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 2292222 - 2292168
Alignment:
Q  39 aaggggaaatcggttgcc--acataataccggctcgaacaaaaaccccttaaaaa 91  Q
    ||||||||||||||||||  ||| || ||||||||||||||||||||||||||||    
T  2292222 aaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaa 2292168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 3677861 - 3677929
Alignment:
Q  34 aatacaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaaaaccaccccaaac 102  Q
    ||||||||||  ||||||||||| ||  | || ||||| ||||||||||||||||||||||||| ||||    
T  3677861 aatacaagggacaatcggttgccgcaatacactggctcaaacaaaaaccccttaaaaaccacccaaaac 3677929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 22887275 - 22887211
Alignment:
Q  33 aaatacaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaaaaccaccc 97  Q
    ||||| ||||| ||||| ||||||||| || || || || |||||||||||||||||||||||||    
T  22887275 aaatataagggaaaatcagttgccacaaaagacaggttcaaacaaaaaccccttaaaaaccaccc 22887211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 819201 - 819263
Alignment:
Q  37 acaaggggaaatcggttgccacataataccggctcgaacaaaaacccctt-aaaaaccacccca 99  Q
    |||| |||||||||||||||||| || |||  |||||||||||||||||| |||||||||||||    
T  819201 acaaagggaaatcggttgccaca-aacaccaactcgaacaaaaaccccttaaaaaaccacccca 819263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 97
Target Start/End: Original strand, 23173074 - 23173107
Alignment:
Q  64 accggctcgaacaaaaaccccttaaaaaccaccc 97  Q
    |||||||||||||||| |||||||||||||||||    
T  23173074 accggctcgaacaaaacccccttaaaaaccaccc 23173107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.0000000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 10124922 - 10124866
Alignment:
Q  37 acaaggggaaatcggttgcc--acataataccggctcgaacaaaaaccccttaaaaa 91  Q
    ||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||    
T  10124922 acaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaa 10124866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 40930902 - 40930962
Alignment:
Q  37 acaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaaaaccacccc 98  Q
    |||||||||||||||||| |||| || | |||||||||||||||| ||||||||||||||||    
T  40930902 acaaggggaaatcggttgtcaca-aacaacggctcgaacaaaaactccttaaaaaccacccc 40930962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 5200552 - 5200616
Alignment:
Q  35 atacaaggggaaatcggttgccacataat-accggctcgaacaaaaaccccttaaaaaccacccc 98  Q
    ||||||||| |||||||||||| || ||  |||||||||||||||||||||||||||| ||||||    
T  5200552 atacaagggaaaatcggttgccgcacaaacaccggctcgaacaaaaaccccttaaaaatcacccc 5200616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 7845138 - 7845076
Alignment:
Q  38 caaggggaaatcggttgccacat-aataccggctcgaacaaaaaccccttaaaaaccaccccaaa 101  Q
    |||||||||||||||||| |||| || ||||||||||||||   |||||||||||||||||||||    
T  7845138 caaggggaaatcggttgcaacattaacaccggctcgaacaat--ccccttaaaaaccaccccaaa 7845076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 24200691 - 24200754
Alignment:
Q  35 atacaaggggaaatcggttgccac-ataataccggctcgaacaaaaaccccttaaaaaccacccc 98  Q
    |||||||||||||||||||||| | | || ||||||||||||||||| | |||||||||||||||    
T  24200691 atacaaggggaaatcggttgccgcaaaaacaccggctcgaacaaaaa-cacttaaaaaccacccc 24200754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 30836212 - 30836272
Alignment:
Q  39 aaggggaaatcggttgccacataa-taccggctcgaacaaaaacccc-ttaaaaaccaccc 97  Q
    |||||||||||| ||||| || || |||||||||||||||||||||| |||||||||||||    
T  30836212 aaggggaaatcgattgccgcacaaataccggctcgaacaaaaacccctttaaaaaccaccc 30836272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 13959301 - 13959347
Alignment:
Q  45 aaatcggttgccacataat-accggctcgaacaaaaaccccttaaaa 90  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||    
T  13959301 aaatcggttgccacataaacaccggctcaaacaaaaaccccttaaaa 13959347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 25829338 - 25829399
Alignment:
Q  37 acaaggggaaatcggttgccacataat-accggctcgaacaaaaaccccttaaaaaccaccc 97  Q
    ||||||||||||||||| ||  ||||  ||||||| ||| ||||||||||||||||||||||    
T  25829338 acaaggggaaatcggtttccctataaacaccggcttgaataaaaaccccttaaaaaccaccc 25829399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 10246969 - 10246909
Alignment:
Q  39 aaggggaaatcggttgccacataataccggctcgaacaaaaacccc-ttaaaaaccacccc 98  Q
    ||||| |||||||||| |||| || ||||||||||||||||||||| ||||||||||||||    
T  10246969 aagggaaaatcggttgtcacacaacaccggctcgaacaaaaacccctttaaaaaccacccc 10246909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 15859154 - 15859092
Alignment:
Q  39 aaggggaaatcggttgccacataat-accggctcgaacaaaaacccctt--aaaaaccacccc 98  Q
    ||||||||||||||||||| | ||  |||||||||||||||||||||||  ||||||||||||    
T  15859154 aaggggaaatcggttgccaaacaaacaccggctcgaacaaaaacccctttaaaaaaccacccc 15859092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 97
Target Start/End: Complemental strand, 6575752 - 6575721
Alignment:
Q  66 cggctcgaacaaaaaccccttaaaaaccaccc 97  Q
    ||||||||||||||||| ||||||||||||||    
T  6575752 cggctcgaacaaaaacctcttaaaaaccaccc 6575721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 47571638 - 47571694
Alignment:
Q  32 taaatacaaggggaaatcggttgccacataataccggctcgaacaaaaaccccttaaa 89  Q
    |||||||||||| |||| |||||||||| || |||||||| |||||||||||||||||    
T  47571638 taaatacaagggaaaattggttgccaca-aacaccggctcaaacaaaaaccccttaaa 47571694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 32183336 - 32183274
Alignment:
Q  39 aaggggaaatcggttgccacataat-accggctcgaacaaaaacccctt--aaaaaccacccc 98  Q
    ||||||||||||||||||| | ||  |||||||||||||||||||||||  ||||||||||||    
T  32183336 aaggggaaatcggttgccatacaaacaccggctcgaacaaaaacccctttaaaaaaccacccc 32183274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 16572134 - 16572074
Alignment:
Q  32 taaatacaaggggaaatcggttgccac-ataataccggctcgaacaaaaaccccttaaaaa 91  Q
    ||||||||||||||||||||||||| | | || ||||| |||||||||| ||| |||||||    
T  16572134 taaatacaaggggaaatcggttgccgcaaaaacaccggttcgaacaaaacccctttaaaaa 16572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 42390874 - 42390906
Alignment:
Q  64 accggctcgaacaaaaaccccttaaaaaccacc 96  Q
    |||||||| ||||||||||||||||||||||||    
T  42390874 accggctcaaacaaaaaccccttaaaaaccacc 42390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University