View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4459-Insertion-14 (Length: 108)

Name: NF4459-Insertion-14
Description: NF4459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4459-Insertion-14
NF4459-Insertion-14
[»] chr7 (3 HSPs)
chr7 (9-108)||(47191384-47191483)
chr7 (10-69)||(30782009-30782067)
chr7 (15-69)||(45625891-45625945)
[»] chr4 (8 HSPs)
chr4 (9-108)||(37794637-37794736)
chr4 (15-73)||(1379241-1379299)
chr4 (10-69)||(17058039-17058098)
chr4 (10-108)||(33075478-33075576)
chr4 (15-71)||(17058542-17058599)
chr4 (51-108)||(17058395-17058452)
chr4 (16-69)||(21349708-21349761)
chr4 (13-90)||(37794473-37794550)
[»] chr8 (2 HSPs)
chr8 (10-108)||(1877164-1877262)
chr8 (15-69)||(23474432-23474486)
[»] chr3 (8 HSPs)
chr3 (10-108)||(36982166-36982264)
chr3 (10-108)||(37007605-37007703)
chr3 (16-108)||(36982349-36982441)
chr3 (16-108)||(37007788-37007880)
chr3 (15-69)||(50722326-50722380)
chr3 (15-69)||(50790469-50790523)
chr3 (10-108)||(36983512-36983611)
chr3 (10-108)||(37008951-37009050)
[»] scaffold0067 (5 HSPs)
scaffold0067 (15-69)||(8924-8978)
scaffold0067 (10-69)||(9654-9713)
scaffold0067 (15-69)||(9289-9343)
scaffold0067 (10-42)||(9133-9165)
scaffold0067 (10-69)||(8741-8800)
[»] chr5 (1 HSPs)
chr5 (16-69)||(31143293-31143346)
[»] chr1 (1 HSPs)
chr1 (10-69)||(23659857-23659916)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 1e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 1e-47
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 47191483 - 47191384
Alignment:
Q  9 gtcccagaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaactacacttcactgatgactgaaacgtggctagaatctgaacg 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47191483 gtcccagaggtaagtcgatcagacgaactatccccaatgagactagtcaacttaggaactacacttcactgatgactgaaacgtggctagaatctgaacg 47191384  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 30782067 - 30782009
Alignment:
Q  10 tcccagaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaacta 69  Q
    |||||||||||||| |||| ||||| ||||||||| ||| ||||||||||||| ||||||    
T  30782067 tcccagaggtaagtagatcggacga-ctatcccctttgaaactagtcaacttatgaacta 30782009  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 45625945 - 45625891
Alignment:
Q  15 gaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaacta 69  Q
    |||||||||||||| |||||||||||||||  || ||||| || |||||||||||    
T  45625945 gaggtaagtcgatcggacgaactatccccttagaaactaggcagcttaggaacta 45625891  T

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Target: chr4 (Bit Score: 84; Significance: 2e-40; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 37794736 - 37794637
Alignment:
Q  9 gtcccagaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaactacacttcactgatgactgaaacgtggctagaatctgaacg 108  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  37794736 gtcccagaggtaagtcgattagacgaactatcccctctgagactagtcaacttaggaactacactccaccgatgactgaaacgtggctagaatctgaacg 37794637  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 1379241 - 1379299
Alignment:
Q  15 gaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaactacact 73  Q
    ||||| |||||||| ||||||||||||||||  | ||||||||||||||||||||||||    
T  1379241 gaggttagtcgatcggacgaactatcccctaaaaaactagtcaacttaggaactacact 1379299  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 17058039 - 17058098
Alignment:
Q  10 tcccagaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaacta 69  Q
    |||| ||||| ||||||||||||||||||||||||  || |||||||||||||| |||||    
T  17058039 tcccggaggttagtcgatcagacgaactatcccctcagaaactagtcaacttagaaacta 17058098  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 33075478 - 33075576
Alignment:
Q  10 tcccagaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaactacacttcactgatgactgaaacgtggctagaatctgaacg 108  Q
    |||| |||||||||||||| |||||||||||||||   | |||||| |||||||||||||   | | |||| ||| |||||||| ||||||| ||||||    
T  33075478 tcccggaggtaagtcgatcggacgaactatccccttaaaaactagttaacttaggaactaatttactctgaggaccgaaacgtgtctagaatttgaacg 33075576  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 17058542 - 17058599
Alignment:
Q  15 gaggtaagtcgatcagacgaactatcccctatgaga-ctagtcaacttaggaactaca 71  Q
    ||||||||||||||  ||||||||||||||  |||| |||||||||||||||||||||    
T  17058542 gaggtaagtcgatctaacgaactatcccctcagagacctagtcaacttaggaactaca 17058599  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 17058395 - 17058452
Alignment:
Q  51 ctagtcaacttaggaactacacttcactgatgactgaaacgtggctagaatctgaacg 108  Q
    ||||||||||||| ||| ||||||  | || |||||||||||||||||||| ||||||    
T  17058395 ctagtcaacttagaaacaacacttgtccgacgactgaaacgtggctagaatttgaacg 17058452  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 21349708 - 21349761
Alignment:
Q  16 aggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaacta 69  Q
    ||||||||||||| ||||||||||||||||  | |||||| |||||| ||||||    
T  21349708 aggtaagtcgatcggacgaactatcccctaataaactagtgaacttatgaacta 21349761  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 37794550 - 37794473
Alignment:
Q  13 cagaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaactacacttcactgatgactgaaac 90  Q
    ||||||||| |||||| | | |||||||| ||  || |||||| ||||||||||||||||||| | | ||||||||||    
T  37794550 cagaggtaaatcgatcgggcaaactatccgcttagaaactagttaacttaggaactacacttctccggtgactgaaac 37794473  T

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Target: chr8 (Bit Score: 47; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-18
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 1877164 - 1877262
Alignment:
Q  10 tcccagaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaactacacttcactgatgactgaaacgtggctagaatctgaacg 108  Q
    ||||||||  ||||| ||||||||||||||||||| ||| ||||||||||||| ||||||||||   | | |||||||||| || ||||||||||||||    
T  1877164 tcccagagtcaagtcaatcagacgaactatcccctctgaaactagtcaacttatgaactacactcttccggtgactgaaacatgactagaatctgaacg 1877262  T

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Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 23474486 - 23474432
Alignment:
Q  15 gaggtaagtcgatcagacgaactatcccct-atgagactagtcaacttaggaacta 69  Q
    |||||||||||||| ||||||||||||||| | || |||||||||||||| |||||    
T  23474486 gaggtaagtcgatcggacgaactatcccctcaaga-actagtcaacttagtaacta 23474432  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 36982264 - 36982166
Alignment:
Q  10 tcccagaggtaagtcgatcagacgaactatcccctatgagac-tagtcaacttaggaactacacttcactgatgactgaaacgtggctagaatctgaacg 108  Q
    |||| ||||||||||||||  |||||||||||||| ||| || |||||||||||||||||||||||| | |  ||||||||| || ||||||| ||||||    
T  36982264 tcccggaggtaagtcgatct-acgaactatcccctttgaaacctagtcaacttaggaactacacttccccggcgactgaaacatgtctagaatttgaacg 36982166  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 37007703 - 37007605
Alignment:
Q  10 tcccagaggtaagtcgatcagacgaactatcccctatgagac-tagtcaacttaggaactacacttcactgatgactgaaacgtggctagaatctgaacg 108  Q
    |||| ||||||||||||||  |||||||||||||| ||| || |||||||||||||||||||||||| | |  ||||||||| || ||||||| ||||||    
T  37007703 tcccggaggtaagtcgatct-acgaactatcccctttgaaacctagtcaacttaggaactacacttccccggcgactgaaacatgtctagaatttgaacg 37007605  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 36982441 - 36982349
Alignment:
Q  16 aggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaactacacttcactgatgactgaaacgtggctagaatctgaacg 108  Q
    ||||||||||||| |||||||||||||||   | ||||||||||||||||||||   | | | || |||||||||||| ||||||| ||||||    
T  36982441 aggtaagtcgatcggacgaactatcccctcaaaaactagtcaacttaggaactaatttactccgaggactgaaacgtgtctagaatttgaacg 36982349  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 37007880 - 37007788
Alignment:
Q  16 aggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaactacacttcactgatgactgaaacgtggctagaatctgaacg 108  Q
    ||||||||||||| |||||||||||||||   | ||||||||||||||||||||   | | | || |||||||||||| ||||||| ||||||    
T  37007880 aggtaagtcgatcggacgaactatcccctcaaaaactagtcaacttaggaactaatttactccgaggactgaaacgtgtctagaatttgaacg 37007788  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 50722326 - 50722380
Alignment:
Q  15 gaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaacta 69  Q
    |||||||||||||| ||||||||||| |||   | ||||||||||||||||||||    
T  50722326 gaggtaagtcgatcggacgaactatctcctcataaactagtcaacttaggaacta 50722380  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 50790523 - 50790469
Alignment:
Q  15 gaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaacta 69  Q
    |||||||||||||| ||||||||||| |||   | ||||||||||||||||||||    
T  50790523 gaggtaagtcgatcggacgaactatctcctcataaactagtcaacttaggaacta 50790469  T

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Target: chr3; HSP #7
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 36983611 - 36983512
Alignment:
Q  10 tcccagaggtaagtcgatcagacgaactatcccctatgagac-tagtcaacttaggaactacacttcactgatgactgaaacgtggctagaatctgaacg 108  Q
    |||||||| |||||||||  ||| ||||||| |||  || || ||||||||||| |||||||||||  | || |||||||| ||| ||||||| ||||||    
T  36983611 tcccagagataagtcgatgtgacaaactatctccttagaaacctagtcaacttacgaactacacttgtccgacgactgaaatgtgtctagaatttgaacg 36983512  T

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Target: chr3; HSP #8
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 37009050 - 37008951
Alignment:
Q  10 tcccagaggtaagtcgatcagacgaactatcccctatgagac-tagtcaacttaggaactacacttcactgatgactgaaacgtggctagaatctgaacg 108  Q
    |||||||| |||||||||  ||| ||||||| |||  || || ||||||||||| |||||||||||  | || |||||||| ||| ||||||| ||||||    
T  37009050 tcccagagataagtcgatgtgacaaactatctccttagaaacctagtcaacttacgaactacacttgtccgacgactgaaatgtgtctagaatttgaacg 37008951  T

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Target: scaffold0067 (Bit Score: 35; Significance: 0.00000000003; HSPs: 5)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 8978 - 8924
Alignment:
Q  15 gaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaacta 69  Q
    ||||||||||||||||||||||||||||||  || ||||||||||  ||||||||    
T  8978 gaggtaagtcgatcagacgaactatcccctcagaaactagtcaaccaaggaacta 8924  T

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Target: scaffold0067; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 9713 - 9654
Alignment:
Q  10 tcccagaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaacta 69  Q
    |||| ||||||||||||||||||||||||| ||||  || |||||| |||||| ||||||    
T  9713 tcccggaggtaagtcgatcagacgaactattccctcggaaactagttaacttaagaacta 9654  T

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Target: scaffold0067; HSP #3
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 9343 - 9289
Alignment:
Q  15 gaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaacta 69  Q
    |||||||||||||| |||||||||| ||||  || ||||||||||||| ||||||    
T  9343 gaggtaagtcgatcggacgaactattccctcagaaactagtcaacttaagaacta 9289  T

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Target: scaffold0067; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 9165 - 9133
Alignment:
Q  10 tcccagaggtaagtcgatcagacgaactatccc 42  Q
    |||| ||||||||||||||||||||||||||||    
T  9165 tccctgaggtaagtcgatcagacgaactatccc 9133  T

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Target: scaffold0067; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 8800 - 8741
Alignment:
Q  10 tcccagaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaacta 69  Q
    |||| |||||||||||||| |||||||||| ||||   | ||||||||||||| ||||||    
T  8800 tccctgaggtaagtcgatcggacgaactattccctcataaactagtcaacttaagaacta 8741  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 31143293 - 31143346
Alignment:
Q  16 aggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaacta 69  Q
    ||||| ||||||| |||||||||||||||| || ||| ||||||||||||||||    
T  31143293 aggtatgtcgatcggacgaactatcccctaagaaacttgtcaacttaggaacta 31143346  T

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Target: chr1 (Bit Score: 28; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 23659857 - 23659916
Alignment:
Q  10 tcccagaggtaagtcgatcagacgaactatcccctatgagactagtcaacttaggaacta 69  Q
    |||| ||||||| | |||| |||||||||||||||   | ||||||||||||||||||||    
T  23659857 tcccggaggtaaatggatcggacgaactatcccctcataaactagtcaacttaggaacta 23659916  T

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