View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4459-Insertion-2 (Length: 824)
Name: NF4459-Insertion-2
Description: NF4459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4459-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 364
Target Start/End: Complemental strand, 34648141 - 34647782
Alignment:
| Q |
7 |
aaatctgagctgaaacacatatctagtgttcgactcatctcaaactttgtgaaaggagacatacaaaaaagaacgaaagaatgaaaaaagttgcggtgaa |
106 |
Q |
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| T |
34648141 |
aaatctgagctgaaacacatatctagtgttcgactcatctcaaactttgtgaaaggagacatacaaaaaagaacgaaagaatgaaaaaagttgcggtgaa |
34648042 |
T |
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| Q |
107 |
cagtttccacgtgcaaatattctgtaagttttgtccatatatgcatcgacatagtttgtccatactgtataatgaagtggtgttatattgttaaaaagaa |
206 |
Q |
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| T |
34648041 |
cagtttccacgtgcaaatattctgtaacttttgtccatatatgtatcgacatagtttgtccatactgtataatgaagtggtgttatattgttaaaaagaa |
34647942 |
T |
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| Q |
207 |
tgtgtccacactgcaaatgcaagttcattgattatccacacaaatttaagaatggcttggctatcctaccccaaaagaaaaatagtggtttggccggtgc |
306 |
Q |
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| T |
34647941 |
tgtgtccacactgcaaatgcaagttcattgattatccacacaaatttaagaatggctttgctatcctaccccaaaagaaaaatagtggtttggccggtgc |
34647842 |
T |
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| Q |
307 |
ttacgtggtttcacttgagtgcttgaagatt--gggcattgatgaaatttacgtatcgac |
364 |
Q |
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| T |
34647841 |
ttacgtggtttcacttgagtgcttgaagatttgtggcattgatgaaatttatgtatcgac |
34647782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 611 - 767
Target Start/End: Complemental strand, 34647536 - 34647382
Alignment:
| Q |
611 |
tagaaatgcaagatcattaattcttcaatgtatgaatgatgtgccaaaaaattcccctggtggtccattatattgtcctggttgccggttgttactactt |
710 |
Q |
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| T |
34647536 |
tagaattgcaagatcattaattcttcaatgtatgaatgatgtgcccaaaaattcccctggtg-tccattatattgtcctg-ttgccggttgttactactt |
34647439 |
T |
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| Q |
711 |
gtgttggttatgctcgtgtcaatcgagtcacacagggcctcttaattgtagccatcg |
767 |
Q |
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| T |
34647438 |
gtgttggttatgctcgtgtcaatcgagtcacacagggcctcttaattgtagccatcg |
34647382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 434 - 543
Target Start/End: Complemental strand, 34647712 - 34647603
Alignment:
| Q |
434 |
cactttacttgatttagtggtattgatttgagatttgtgagtatgttcctcctcgattcttagatttgattatcttctgtatcaatttgaatggtttaat |
533 |
Q |
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| T |
34647712 |
cactttgcttgatttagtggtattgacttgagatctgtgagtatgttcctctttgattcttagatttgattctcttttgtgtcaatttaaatggtctaat |
34647613 |
T |
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| Q |
534 |
ttaacttctt |
543 |
Q |
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| T |
34647612 |
ttaacttctt |
34647603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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