View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4459-Insertion-3 (Length: 801)
Name: NF4459-Insertion-3
Description: NF4459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4459-Insertion-3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 447 - 801
Target Start/End: Complemental strand, 47512837 - 47512483
Alignment:
| Q |
447 |
cttgtaaaaaagttatcagatccaaaactaaagctaaacattatatatgtagttggttgagaatttgtttaactggatttctagtacatagatagttaga |
546 |
Q |
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| T |
47512837 |
cttgtaaaaaagttatcagatccaaaactaaagctaaacattagatatgtagttggttgagaatttgtttaactg-atttctagtacatagatagttaga |
47512739 |
T |
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| Q |
547 |
ttaattatccttgttatcttcttcatttccatatggactca--tatatataaatagagtctcatgtaccaccagggtttagtacaacagtgtgtgggtgt |
644 |
Q |
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| T |
47512738 |
ttaattatccttgttatcttcttcattttcatatggactctcgtatatataaatagagtctcatgtaccaccagggtttagtacaacagtgtgtgggtgt |
47512639 |
T |
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| Q |
645 |
tgttaactctagggtaccaagtttgattcctactcgttnnnnnnnngtcttttggtattca-ttattgatcaagttatcaataactgagatatttcagca |
743 |
Q |
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| T |
47512638 |
tgttaactctagggtaccaagtttgattcctactcgttaaaaaaaagtctttt-gtattcatttattgatcaagttatcaataactgagatatttcagca |
47512540 |
T |
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| Q |
744 |
atactaaatgcaaatataatatgtttgtactttgttggtacaaaaagttgaacatttt |
801 |
Q |
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| T |
47512539 |
atactaaatgcaaatataatatgtttatactttgtt-gtacaaaaagttgaacatttt |
47512483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 47513276 - 47512943
Alignment:
| Q |
8 |
taatagctctttatctgttccatgcatcagattttgattctgggtttggttaaattcatcatggaatatttaggggaaggnnnnnnn--atgtattgtat |
105 |
Q |
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| T |
47513276 |
taatagctctttatctgttccatgcatcagattttgattctgggtttgcttaaattcatcatggaatatttaggggaagctttttttttatgtattgtat |
47513177 |
T |
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| Q |
106 |
gtgtgtgtgggaaggatgnnnnnnnggagttcaattatgatgtgggttgtcaaaaagatgatatttttatggtttctaggcatggtttcccagaaccttt |
205 |
Q |
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| T |
47513176 |
gtgtgtgtggcaagcatgtttttttggagttcaattatgatgtgggttgtcaaaaagatgatatttttatgctttctagccatgctttccccgaaccttt |
47513077 |
T |
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| Q |
206 |
tttcacatgctcaccaaaagcatacctaactggataatccttttgaaggaacataggtcatacagagtaaaaatactccctcttgtaaaatttataagga |
305 |
Q |
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| T |
47513076 |
tttcacatgctcaccaaaagcatacctaactgcataatccttttgaaggaacataggtcatacagaggaaaaatactccctcttgtaaaatttataagga |
47512977 |
T |
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| Q |
306 |
ttttaatttaacattctaacagggactgggagtg |
339 |
Q |
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| T |
47512976 |
ttttaatttaacattctaacagggactgggagtg |
47512943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 546 - 605
Target Start/End: Complemental strand, 45369986 - 45369927
Alignment:
| Q |
546 |
attaattatccttgttatcttcttcatttccatatggactcatatatataaatagagtct |
605 |
Q |
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| T |
45369986 |
attagttatccttgttatccttttcattttcatatggactcatatgtataaatagagtct |
45369927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 539 - 590
Target Start/End: Original strand, 43651727 - 43651778
Alignment:
| Q |
539 |
tagttagattaattatccttgttatcttcttcatttccatatggactcatat |
590 |
Q |
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| T |
43651727 |
tagttagattaggtatccttgttatcttattcattttcatatgggctcatat |
43651778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 534 - 593
Target Start/End: Complemental strand, 47823292 - 47823233
Alignment:
| Q |
534 |
atagatagttagattaattatccttgttatcttcttcatttccatatggactcatatata |
593 |
Q |
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| T |
47823292 |
atagttagttaggttagttatccttgttttcttcgtcattttcatatggactcatgtata |
47823233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 699 - 741
Target Start/End: Complemental strand, 29644698 - 29644656
Alignment:
| Q |
699 |
gtattcattattgatcaagttatcaataactgagatatttcag |
741 |
Q |
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| T |
29644698 |
gtattccttattgatcaagttatcaataaatgcgatatttcag |
29644656 |
T |
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