View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4459-Insertion-5 (Length: 454)
Name: NF4459-Insertion-5
Description: NF4459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4459-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 29 - 318
Target Start/End: Complemental strand, 26145177 - 26144894
Alignment:
| Q |
29 |
aagatgaagaataattcttgtaaaaaaccttcctaattgtaaatacaaaaattatttcaatacacgagaaaaattgaaaatattgaaagaagcttcttgt |
128 |
Q |
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| T |
26145177 |
aagatgaagaataattcttgtaaaaaaccttcctaattgtaaatacaaaaactatttcaatacacgagaaaaattgaaaatattgaaagaagcttcttgt |
26145078 |
T |
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| Q |
129 |
gagattattatgtggcccctcctccaattttagtttgtgtaaagtacaaagacaaaataaatagaaaaagaagtggtannnnnnncgtcggtttatgccg |
228 |
Q |
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| T |
26145077 |
gagattattatgtggcccctcctccaattttagtttgtgtaaagtacaaagacaaaataaatagaaaaagaagtggta---ttttcgtcggtttatgccg |
26144981 |
T |
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| Q |
229 |
tgtaatggaagttataaattgacttgagatacccaaaactaaatcgttactaaaccaaccaacgaacgagtgaaaaaag-aactctgattc |
318 |
Q |
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| T |
26144980 |
tgtaacggaagttataaattgactagagatacccaaaactaaatcgttactaaaccaacc----aacgagtgaaaaaagcaactctgattc |
26144894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 396 - 454
Target Start/End: Complemental strand, 26144817 - 26144759
Alignment:
| Q |
396 |
aaaagccacgttatgcatagaggaataagccaccacaccataacacacccatctctctg |
454 |
Q |
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| T |
26144817 |
aaaagccacgttatgcatagaggaataagccaccacaccataacacacccatctctctg |
26144759 |
T |
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