View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4459-Insertion-9 (Length: 231)
Name: NF4459-Insertion-9
Description: NF4459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4459-Insertion-9 |
 | |
|
| [»] scaffold0531 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0531 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 4940 - 4989
Alignment:
| Q |
181 |
gaatttgagcacatatggagtaatttgctaatataatcctacagctaatt |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
4940 |
gaatttgagcacatatggagtaatttgctaataaaatcctccagctaatt |
4989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 5906 - 5938
Alignment:
| Q |
67 |
aaatttcagaaattccaagtatttgaacatttt |
99 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
5906 |
aaatttcagaaattccaagtatttggacatttt |
5938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 8031145 - 8031113
Alignment:
| Q |
67 |
aaatttcagaaattccaagtatttgaacatttt |
99 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
8031145 |
aaatttcagaaattccaagtatttggacatttt |
8031113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University