View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4459_high_4 (Length: 394)
Name: NF4459_high_4
Description: NF4459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4459_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 375
Target Start/End: Original strand, 14762041 - 14762405
Alignment:
| Q |
11 |
cacagataaccaacctgaacagagtttgcaataaaagctaggtgataggagagatctctgactcccaaagccttaaggcccctcacaccttcattaccag |
110 |
Q |
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| T |
14762041 |
cacagataaccaacctgaacagagtttgcaataaaagctaggtgataggagagatctctgactcccaaagccttaaggcccctcacaccttcattaccag |
14762140 |
T |
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| Q |
111 |
atgtggaacccttgcgttgagaagcttcccggcggtattctgccctctgtccagggcacgccaatgccaatatatcaggtataacaactacagtacccgt |
210 |
Q |
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| T |
14762141 |
atgtggaacccttgcgttgagaagcttcccggtggtattctgccctctgtccagggcacgccaatgccaatatatcaggtataacaactacagtacccgt |
14762240 |
T |
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| Q |
211 |
aaaaatcgccctacaagaagacagattgcggttgattatttataaatgaacacttaaattttactatgatttgatcagttcaagcagactagggacaagg |
310 |
Q |
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| T |
14762241 |
aaaaatcgccctacaagaagacagattgcggttgattatttataaatgaacacttgaattttactatgatttgatcagttcaagcagactagggacaagg |
14762340 |
T |
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| Q |
311 |
gaaatctcacgtgtcaccagccctggcatgttcgacaatctcatgacgaagaataacatccaatg |
375 |
Q |
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| T |
14762341 |
gaaatctcacgtgtcaccagccctggcatgttcgacaatctcatgacgaagaataacatccaatg |
14762405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 37648826 - 37649195
Alignment:
| Q |
16 |
ataaccaacctgaacagagtttgcaataaaagctaggtgataggagagatctctgactcccaaagccttaaggcccctcacaccttcattaccagatgtg |
115 |
Q |
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| T |
37648826 |
ataacgaacctgaacagagttggcaataaaagcaagtcggtaggagaggtctctgactcccaaagccctaaggcccctcacaccttcatttccagatgaa |
37648925 |
T |
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| Q |
116 |
gaacccttgcgttgagaagcttcccggcggtattctgccctctgtccagggcacgccaatgccaatatatcaggtataacaactacagtacccgtaaaaa |
215 |
Q |
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| T |
37648926 |
gcacccttgcgttgagaagcttccctacgacattctgatctctcaccaggggacgccaacgccaatatatcaggtatgacaattacagttccagtaaaaa |
37649025 |
T |
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| Q |
216 |
tcgccctac-aagaagacagattgcgg-ttgattat----ttataaat----gaacacttaaattttactatgatttgatcagttcaagcagactaggga |
305 |
Q |
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| T |
37649026 |
tcaccctgcaaattggacagtttgcggtttgattattgacttccaaattccataaagtttacatttcagtacaatttgaaaagttaaagcagattcaggg |
37649125 |
T |
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| Q |
306 |
caagggaaatctcacgtgtcaccagccctggcatgttcgacaatctcatgacgaagaataacatccaatg |
375 |
Q |
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|||| |||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
37649126 |
caagagaaaactcacgtgtcaccagccctagcatgttctacaatctcatgacgaagaataacatccaatg |
37649195 |
T |
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