View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4459_low_1 (Length: 475)
Name: NF4459_low_1
Description: NF4459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4459_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 21073545 - 21073984
Alignment:
| Q |
19 |
cctattgttccttttataatccatgttcttcttatcattcattcgatgataaccagaaatctcaacgttcgagcatatatgagtgtgagttgtgcggcaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21073545 |
cctattgttccttttataatccatgttcttcttatcattcattcgatgataacgagaaatctcaacgttcgagcatatatgagtgtgagttgtgcggcaa |
21073644 |
T |
|
| Q |
119 |
aagtttcaactccggagccgcactcggtggccacaaaacatctcaccgctcacaacctcataacaagaaacaaaaacacaatcatgctgttaacaatgat |
218 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||| |
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| T |
21073645 |
aaggttcaactccggagctgcactcggtggccacaaaacatctcaccgttcacaacctcaaaacaagaaacaaagacacaatcatgctgttaacaaggat |
21073744 |
T |
|
| Q |
219 |
gataaagatgatgagaaacagaaacattgttgtcgtgtttgcaacaaggttttttcatcgaagcaggctttgtgtggacacatgagatgtcacaaaagag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21073745 |
gataaagatgatgagaaacagaaacattgttgtcgtgtttgcaacaaggttttttcatccaagcaggctttgtgtggacacatgagatgtcacaaaagag |
21073844 |
T |
|
| Q |
319 |
atgggaagagtattcacctgccgacttcatcatctattgacttatcaaaatatttgttaccaatatggcatccgaccaataaaggtagcaagaggaatac |
418 |
Q |
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| T |
21073845 |
atgggaaggatattcacctgccgacttcatcatctattgatttatcaaaatatttgctaccaatatcgtatccgaccaataaaggtagcaagaggaa--- |
21073941 |
T |
|
| Q |
419 |
tatgatcgatgaagatgttgctcgaacactcatcgaaatatct |
461 |
Q |
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|| || ||||||||||||||||||||||||||| |||||||| |
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| T |
21073942 |
aatcattgatgaagatgttgctcgaacactcatcaaaatatct |
21073984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 21156034 - 21155777
Alignment:
| Q |
23 |
ttgttccttttataatccatgttcttcttatcattcattcgatgataaccagaaatctcaacgttcgagcatatatgagtgtgagttgtgcggcaaaagt |
122 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || ||||| ||||| ||||||||||| | |
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| T |
21156034 |
ttgttccttttataatccatgttcttcttttcattcattcgatgataatgagaaatctcaacgttcgagaatgtatgactgtgatttgtgcggcaagaag |
21155935 |
T |
|
| Q |
123 |
ttcaactccggagccgcactcggtggccacaaaacatctca---ccgctcacaacctcataacaagaaacaaaaacacaatcatgctgttaacaatgatg |
219 |
Q |
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|||||||| || ||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||||| |||| || |||| |
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| T |
21155934 |
ttcaactctggcaacgcactcggtggccacaaaacatctcaccgccgctcacaacctctacacaagaaacagcgacatgatcatgctattaataaggatg |
21155835 |
T |
|
| Q |
220 |
ataaagatgatgagaaacagaaacattgttgtcgtgtttgcaacaaggttttttcatc |
277 |
Q |
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|| | |||||||||||||||||| || |||||| |||||||||||||||||||||||| |
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| T |
21155834 |
atgatgatgatgagaaacagaaatatagttgtcctgtttgcaacaaggttttttcatc |
21155777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 27732552 - 27732409
Alignment:
| Q |
23 |
ttgttccttttataatccatgttcttcttatcattcattcgatgataaccagaaatctcaacgttcgagcatatatgagtgtgagttgtgcggcaaaagt |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| || |||| || |||||||||||||||||||||||||| |
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| T |
27732552 |
ttgttccttttataatccatgttcttcttttcattcattccatgataatgagaaatctcaaggtccgagaatgtatgagtgtgagttgtgcggcaaaagg |
27732453 |
T |
|
| Q |
123 |
ttcaactccggagccgcactcggtggccacaaaacatctcaccg |
166 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||||||| |
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| T |
27732452 |
ttcaactctggcaatgcactcggtggccacaaaacatctcaccg |
27732409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 27732377 - 27732299
Alignment:
| Q |
225 |
gatgatgagaaacagaaacattgttgtcgtgtttgcaacaaggttttttcatcgaagcaggctttgtgtggacacatga |
303 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||||||||||||||||||||| || ||||||| || ||||| |||| |
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| T |
27732377 |
gatgatgagaaacagaaacataggtgtcctgtttgcaacaaggttttttcatccaacaaggctttttgcggacatatga |
27732299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 3074210 - 3073961
Alignment:
| Q |
23 |
ttgttccttttataatccatgttcttcttatcattcattcgatgataaccagaaatctcaacgttcgagcatatatgagtgtgagttgtgcggcaaaagt |
122 |
Q |
| |
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|||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||||| |||||| || | ||||||||| ||||| |||||| |
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| T |
3074210 |
ttgttccttttataatccgtgttcttcttttcattcattcaatgatattgagaaatctcaaggttcgacaatgtgtgagtgtgatttgtgtaacaaaagg |
3074111 |
T |
|
| Q |
123 |
ttcaactccggagccgcactcggtggccacaaaacatctca---ccgctcacaacctcataacaagaaacaaaaacacaatcatgctgttaacaatgatg |
219 |
Q |
| |
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||||||| || ||||||||||||||| ||||||||| |||||||||||||| |||||||||| | || | |||||||| |||| || | |
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| T |
3074110 |
ttcaactttggcaatgcactcggtggccac--aacatctcaccgccgctcacaacctctacacaagaaacagagacgcgatcatgctattaataagg--- |
3074016 |
T |
|
| Q |
220 |
ataaagatgatgagaaacagaaacattgttgtcgtgtttgcaacaaggttttttcatc |
277 |
Q |
| |
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|||||||| ||| |||||||| |||||| |||||||||||| ||||||||||| |
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| T |
3074015 |
---gcgatgatgaaaaatagaaacatagttgtcctgtttgcaacaaagttttttcatc |
3073961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 21249285 - 21249374
Alignment:
| Q |
214 |
atgatgataaagatgatgagaaacagaaacattgttgtcgtgtttgcaacaaggttttttcatcgaagcaggctttgtgtggacacatga |
303 |
Q |
| |
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|||||||| | |||||| |||||||||||||| |||||| |||||||||||||||||||||||| || ||||||| || ||||| |||| |
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| T |
21249285 |
atgatgatgatgatgatcagaaacagaaacatggttgtcttgtttgcaacaaggttttttcatccaataaggctttatgcggacatatga |
21249374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 21249097 - 21249238
Alignment:
| Q |
23 |
ttgttccttttataatccatgttcttcttatcattcattcgatgataaccagaaatctcaacgttcgagcatatatgagtgtgagttgtgcggcaaaagt |
122 |
Q |
| |
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||||||||||| ||||| |||||||||| | ||| || ||| ||| |||||| |||| |||| || || ||||||||||| ||||||| |||||| |
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| T |
21249097 |
ttgttcctttttgaatccttgttcttcttttaattagtttgatcgtaatgagaaatatcaaggttctagaatgtatgagtgtgatttgtgcgacaaaagg |
21249196 |
T |
|
| Q |
123 |
ttcaactccggagccgcactcggtggccacaaaacatctcac |
164 |
Q |
| |
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|||||| | || | |||||||||||||||||||||||||| |
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| T |
21249197 |
ttcaacgctggcaacacactcggtggccacaaaacatctcac |
21249238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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