View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4459_low_2 (Length: 423)

Name: NF4459_low_2
Description: NF4459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4459_low_2
NF4459_low_2
[»] chr3 (7 HSPs)
chr3 (8-205)||(5498977-5499174)
chr3 (313-406)||(5498766-5498859)
chr3 (243-311)||(5498917-5498985)
chr3 (8-77)||(2550670-2550739)
chr3 (8-77)||(7407279-7407348)
chr3 (8-77)||(13846496-13846565)
chr3 (23-77)||(1655081-1655135)
[»] chr4 (3 HSPs)
chr4 (327-406)||(24557788-24557868)
chr4 (8-77)||(43600771-43600840)
chr4 (348-382)||(24557920-24557954)
[»] chr2 (3 HSPs)
chr2 (147-225)||(27149572-27149650)
chr2 (8-77)||(31342257-31342326)
chr2 (371-406)||(27149921-27149956)
[»] chr7 (2 HSPs)
chr7 (23-77)||(19747730-19747784)
chr7 (23-77)||(4684943-4684997)
[»] scaffold0576 (1 HSPs)
scaffold0576 (8-77)||(7205-7274)
[»] chr8 (3 HSPs)
chr8 (8-77)||(25639313-25639382)
chr8 (8-77)||(45355639-45355708)
chr8 (23-77)||(28248620-28248674)
[»] chr6 (2 HSPs)
chr6 (8-77)||(15362221-15362290)
chr6 (8-77)||(16735310-16735379)
[»] chr5 (2 HSPs)
chr5 (23-77)||(5077354-5077408)
chr5 (23-77)||(7411818-7411872)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 6e-81; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 5499174 - 5498977
Alignment:
Q  8 aagcaaaggcgcaatacaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgaccttattgatttctaccttttgaagatcagaaagg 107  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5499174 aagcaacgccgcaatacaaaggagattaaagaaaaggattgcatttctattgtgctgcttgatgacattattgatttctaccttttgaagatcagaaagg 5499075  T
Q  108 tatggtggttgtatatatttactcnnnnnnnctaagaatggtatgcataaatgattgtttcgttagattcctttaagttttaatcttgcatattttca 205  Q
    ||||||| ||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5499074 tatggtgattgtatatatttactctttttttctaagaatggtatgcttaaatgattgtttcgttagattcctttaagttttaatcttgcatattttca 5498977  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 313 - 406
Target Start/End: Complemental strand, 5498859 - 5498766
Alignment:
Q  313 ttgctcactgtcgttttttatcttccttttgtgacatatccctatcatttggtgaatatgatgaactaattccatatgtttacttaaaagattg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5498859 ttgctcactgtcgttttttatcttccttttgtgacatatccctatcatttggtgaatatgatgaactaattccatatgtttacttaaaagattg 5498766  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 5498985 - 5498917
Alignment:
Q  243 atattgtcaagttgtgagacgttgagcattgcttgaagttttcatattcagttgggtgtcgtttttgtt 311  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5498985 atattttcaagttgtgagatgttgagcattgcttgaagttttcatattcagttgggtgtcgtttttgtt 5498917  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 2550739 - 2550670
Alignment:
Q  8 aagcaaaggcgcaatacaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    |||||| ||| ||| ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  2550739 aagcaacggcacaagacaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 2550670  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 7407279 - 7407348
Alignment:
Q  8 aagcaaaggcgcaatacaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    |||||| ||| ||| ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  7407279 aagcaacggcacaagacaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 7407348  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 13846565 - 13846496
Alignment:
Q  8 aagcaaaggcgcaatacaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    |||||| ||| ||| ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  13846565 aagcaacggcacaagacaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 13846496  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 1655135 - 1655081
Alignment:
Q  23 acaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  1655135 acaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 1655081  T

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Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 327 - 406
Target Start/End: Original strand, 24557788 - 24557868
Alignment:
Q  327 tttttatcttccttttgt-gacatatccctatcatttggtgaatatgatgaactaattccatatgtttacttaaaagattg 406  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24557788 ttttgatcttccttttgttgatatatccctatcatttggtgaatatgatgaactaattccataagtttacttaaaagattg 24557868  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 43600840 - 43600771
Alignment:
Q  8 aagcaaaggcgcaatacaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    |||||| ||| ||| ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  43600840 aagcaacggcacaagacaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 43600771  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 382
Target Start/End: Original strand, 24557920 - 24557954
Alignment:
Q  348 atatccctatcatttggtgaatatgatgaactaat 382  Q
    |||||||||||||||||||||||||||||||||||    
T  24557920 atatccctatcatttggtgaatatgatgaactaat 24557954  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 27149572 - 27149650
Alignment:
Q  147 ggtatgcataaatgattgtttcgttagattcctttaagttttaatcttgcatattttcatcattgctaatgaataaaca 225  Q
    ||||| |||||||||||||||  |||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  27149572 ggtatacataaatgattgttttattagattcctttaagttttagtctagcatattttcatcattgcgaatgaataaaca 27149650  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 31342257 - 31342326
Alignment:
Q  8 aagcaaaggcgcaatacaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    |||||| ||| ||| ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  31342257 aagcaacggcacaagacaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 31342326  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 371 - 406
Target Start/End: Original strand, 27149921 - 27149956
Alignment:
Q  371 tgatgaactaattccatatgtttacttaaaagattg 406  Q
    ||||||||||||| ||||||||||||||||||||||    
T  27149921 tgatgaactaatttcatatgtttacttaaaagattg 27149956  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 19747784 - 19747730
Alignment:
Q  23 acaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||    
T  19747784 acaaaggagattaaagagaaggattgcatttctaatgtgcagcttgatgacctta 19747730  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 4684943 - 4684997
Alignment:
Q  23 acaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  4684943 acaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 4684997  T

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Target: scaffold0576 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 7274 - 7205
Alignment:
Q  8 aagcaaaggcgcaatacaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    |||||| ||| ||| ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  7274 aagcaacggcacaagacaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 7205  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 25639382 - 25639313
Alignment:
Q  8 aagcaaaggcgcaatacaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    |||||| ||| ||| ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  25639382 aagcaacggcacaagacaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 25639313  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 45355639 - 45355708
Alignment:
Q  8 aagcaaaggcgcaatacaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    |||||| ||| ||| ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  45355639 aagcaacggcacaagacaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 45355708  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 28248620 - 28248674
Alignment:
Q  23 acaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  28248620 acaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 28248674  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 15362290 - 15362221
Alignment:
Q  8 aagcaaaggcgcaatacaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    |||||| ||| ||| ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  15362290 aagcaacggcacaagacaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 15362221  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 16735379 - 16735310
Alignment:
Q  8 aagcaaaggcgcaatacaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    |||||| ||| ||| ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  16735379 aagcaacggcacaagacaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 16735310  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 5077354 - 5077408
Alignment:
Q  23 acaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    ||||||||| ||||||| |||| |||||||||| |||||| ||||||||||||||    
T  5077354 acaaaggaggttaaagagaaggcttgcatttctcctgtgcagcttgatgacctta 5077408  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 7411872 - 7411818
Alignment:
Q  23 acaaaggagattaaagaaaaggattgcatttctactgtgctgcttgatgacctta 77  Q
    ||||||||||||||||| |||| ||||||||||  ||||| ||||||||||||||    
T  7411872 acaaaggagattaaagagaaggcttgcatttctcatgtgcagcttgatgacctta 7411818  T

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