View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4459_low_3 (Length: 402)
Name: NF4459_low_3
Description: NF4459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4459_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 206 - 387
Target Start/End: Complemental strand, 8994189 - 8994008
Alignment:
| Q |
206 |
atatcttttaatcgaagaaacgaggaatatattatataaatgtattaaggatgactcaccaggtgaaattcatgatctcacaacagttatactccacgaa |
305 |
Q |
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| T |
8994189 |
atatcttttaatcgaagaaacgaggaatatattatataaatgtattaaggatgactcaccaggtgaaattcatgatctcacaacagttatactccacgaa |
8994090 |
T |
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| Q |
306 |
agttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcattttgaaaaactgaaatcct |
387 |
Q |
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| T |
8994089 |
agttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcattttgaaaaactgaaatcct |
8994008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 206 - 387
Target Start/End: Complemental strand, 9028846 - 9028665
Alignment:
| Q |
206 |
atatcttttaatcgaagaaacgaggaatatattatataaatgtattaaggatgactcaccaggtgaaattcatgatctcacaacagttatactccacgaa |
305 |
Q |
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| T |
9028846 |
atatcttttaatcgaagaaacgaggaatatattatataaatgtattaaggatgactcaccaggtgaaattcatgatctcacaacagttatactccacgaa |
9028747 |
T |
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| Q |
306 |
agttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcattttgaaaaactgaaatcct |
387 |
Q |
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| T |
9028746 |
agttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcattttgaaaaactgaaatcct |
9028665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 8994330 - 8994203
Alignment:
| Q |
11 |
cagagacaacatgagagagaatccctgagttgttcagagcttccacaaaccacacatgattatcaaagtgatcattgcccatggaaacatcagtatctgg |
110 |
Q |
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| T |
8994330 |
cagaaacaacacgagagagaatccctgatttgttcagagcttccacaaaccacacatgattatcaaagtgatcattacccatggaaacatcagtatctgg |
8994231 |
T |
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| Q |
111 |
ttttgagaagaacaggaacaatctgcgt |
138 |
Q |
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| T |
8994230 |
ttttgagaagaataggaacaatctgcgt |
8994203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 9028987 - 9028860
Alignment:
| Q |
11 |
cagagacaacatgagagagaatccctgagttgttcagagcttccacaaaccacacatgattatcaaagtgatcattgcccatggaaacatcagtatctgg |
110 |
Q |
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| T |
9028987 |
cagaaacaacacgagagagaatccctgatttgttcagagcttccacaaaccacacatgattatcaaagtgatcattacccatggaaacatcagtatctgg |
9028888 |
T |
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| Q |
111 |
ttttgagaagaacaggaacaatctgcgt |
138 |
Q |
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| T |
9028887 |
ttttgagaagaataggaacaatctgcgt |
9028860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 301 - 387
Target Start/End: Complemental strand, 9019349 - 9019263
Alignment:
| Q |
301 |
acgaaagttggagtaaattggtttgttaagattattgatgttgaagtaaagtgtatctatcatatcattttgaaaaactgaaatcct |
387 |
Q |
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| T |
9019349 |
acgaaagttggagtaaattggtttgtgaagattattgatgttgaagtaacgtgtatctatcatatcattttgaaaaactgaaatcct |
9019263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 9019458 - 9019407
Alignment:
| Q |
101 |
cagtatctggttttgagaagaacaggaacaatctgcgtcgagaaggagaagg |
152 |
Q |
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| T |
9019458 |
cagtatctggttttgagatgaacatgaacaatctgagtcgagaaggggaagg |
9019407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 44884173 - 44884348
Alignment:
| Q |
16 |
acaacatgagagagaatccctgagttgttcagagcttccacaaaccacacatgattatcaaagtgatcattgcccatggaaacatcagtatctggttttg |
115 |
Q |
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|||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| |||||||||||| ||||||||||||||| |
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| T |
44884173 |
acaacacgagacagaatccctgagttgttgagagcttccacaaaccatgcatgattataaaagtgaccatttcccatggaaacagcagtatctggttttg |
44884272 |
T |
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| Q |
116 |
agaagaacaggaacaatctgcgtcga------gaaggagaagggtttgacgacaaatgatcatactcttttatcat |
185 |
Q |
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| T |
44884273 |
agaagaagaggaacaatctgagtcgagaaggtgaaggagaagggtttgaagacaaacgatcatactcatctatcat |
44884348 |
T |
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