View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4460-Insertion-2 (Length: 559)
Name: NF4460-Insertion-2
Description: NF4460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4460-Insertion-2 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 228 - 559
Target Start/End: Complemental strand, 29029418 - 29029088
Alignment:
| Q |
228 |
atcatttattccccccttagaaatttttatgtggattttaattacttcatctgatcttaaatataagcaacaaaaatacatatatttggtttaaatttga |
327 |
Q |
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| T |
29029418 |
atcatttattcccccctt-gaagtttttatgtggattttaattacttcatctgatcctaaatataagcaacaaaaatacatatatttagtttaaatttgg |
29029320 |
T |
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| Q |
328 |
atcaaatacattgtcacgtttaagatttaattaacgatgtatgtgtatctttgtatgttggtttctccgaaacagct--gagagtgtcactatggttttc |
425 |
Q |
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| T |
29029319 |
atcaaatacatttccatacttaagatctaattaacgatgtatgtgtatttttgtatgttggtttctccgaggcagctgagagagtgtcactatggttttc |
29029220 |
T |
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| Q |
426 |
acttgtgtggtctcatgcttaannnnnnnggt--tgtgtggattttgcttaattagattataattacatcatgggaaggtccaaggcatcaacatgtata |
523 |
Q |
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| T |
29029219 |
acttgtgtggtctcatgcttaatttttttggttgtgtgtggtttttgcttaattagattataattacatcatgggaaggtccaaggcatcaacatg---- |
29029124 |
T |
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| Q |
524 |
tatcttctatgaattatttgcaactctttctcaata |
559 |
Q |
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||| |||||||||||||||||||||||||||||||| |
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| T |
29029123 |
tattttctatgaattatttgcaactctttctcaata |
29029088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 29029674 - 29029609
Alignment:
| Q |
8 |
gtttcataaatgattgttgtttatttatatatat------ttattatcttgcttatttgtttgcat |
67 |
Q |
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| T |
29029674 |
gtttcataaatgattgttgtttatttatatatatatatatttattatcttgcttatttgtttgcat |
29029609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 29029505 - 29029447
Alignment:
| Q |
172 |
gaaagctgaaaaagtagagtatgtc---aaaccaatttctcatatattctctcatatac |
227 |
Q |
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| T |
29029505 |
gaaagctgaaaaagtagagtatgtcgtcaatccaatttctcatatattctctcatatac |
29029447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 228 - 384
Target Start/End: Complemental strand, 36070285 - 36070134
Alignment:
| Q |
228 |
atcatttattccccccttagaaatttttatgtggattttaattacttcatctgatcttaaatataagcaacaaaaatacatatatttggtttaaatttga |
327 |
Q |
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| T |
36070285 |
atcatttatttcccccctttaaatttttatgtggattttaattactccatctcattataaatataagcaa-aaaaatacatatatttggcctaaatttgg |
36070187 |
T |
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| Q |
328 |
atcaaatacattgtcacgtttaagatttaattaacgatgtatgtgtatctttgtatg |
384 |
Q |
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| T |
36070186 |
atcaaatacattgccatacttaagat----ataaggatgtatgtgtatctttgtatg |
36070134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 466 - 554
Target Start/End: Complemental strand, 36070106 - 36070022
Alignment:
| Q |
466 |
ttttgcttaattagattataattacatcatgggaaggtccaaggcatcaacatgtatatatcttctatgaattatttgcaactctttct |
554 |
Q |
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| T |
36070106 |
ttttgcttaattagattataattacttcatagcaaggtccaaggcatcaacatgtattt----tatatgaattatttgcaaatctttct |
36070022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 447
Target Start/End: Original strand, 27589409 - 27589615
Alignment:
| Q |
231 |
atttattccccccttagaaatttttatgtggattttaattacttcatctgatcttaaatataagcaacaaaaatacatatatttggtttaaatttgaatc |
330 |
Q |
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| T |
27589409 |
atttattcccccctt-gaaatttttatgcggattttaattgctccctttgatcttaaa-ataagaaaataaagtacatgtatttggtataaatttggat- |
27589505 |
T |
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| Q |
331 |
aaatacattgtcacgtttaagatttaattaacgatgtatgtgtatc-tttgtatgttggtttctccgaaacagctgagagtgtcactatggttttcactt |
429 |
Q |
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| T |
27589506 |
---tgcatgtgcatatttaagatctaat----gatgtatttgtatcttttgtatgtt-gtttcttcgaggcagctgagagtatcactatggttttcattt |
27589597 |
T |
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| Q |
430 |
gtgtggtctcatgcttaa |
447 |
Q |
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| T |
27589598 |
gcgtgatatcatgcttaa |
27589615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 339
Target Start/End: Complemental strand, 142208 - 142179
Alignment:
| Q |
310 |
tatttggtttaaatttgaatcaaatacatt |
339 |
Q |
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| T |
142208 |
tatttggtttaaatttgaatcaaatacatt |
142179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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