View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4460-Insertion-3 (Length: 305)
Name: NF4460-Insertion-3
Description: NF4460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4460-Insertion-3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 23110802 - 23111099
Alignment:
| Q |
8 |
tctttgtccaaattggtatactggcaatgataaatcaatgatcctagccaactgtcttttccgttctggaggttgcgcggttcttttgacaaacaaaaga |
107 |
Q |
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| T |
23110802 |
tctttgtccaaattggtatactggcaatgataaatcaatgatcctagccaactgtcttttccgttctggaggttgcgcggttcttttgacaaacaaaaga |
23110901 |
T |
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| Q |
108 |
tccttaaagaacagaagtatattgaaattgaagtgtttagtacgaacgcaccacggcgccagagatgactcttacacttgctgcactcaaaaggaagatg |
207 |
Q |
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| T |
23110902 |
tccttaaagaacagaagtatattgaaattgaagtgtttagtacgaacgcaccacggcgccagagatgactcttacacttgctgcactcaaaaggaagatg |
23111001 |
T |
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| Q |
208 |
agcagggtaggcttggtattcacttagggaaaactcttccaaaagcagcaacaagagcttttgttgatagtttaagggtaatttcacccaaaattttg |
305 |
Q |
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| T |
23111002 |
agcagggtaggcttggtattcacttagggaaaactcttccaaaagcagcaacaagagcttttgttgataatttaagggtaatttcacccaaaattttg |
23111099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 23073559 - 23073262
Alignment:
| Q |
8 |
tctttgtccaaattggtatactggcaatgataaatcaatgatcctagccaactgtcttttccgttctggaggttgcgcggttcttttgacaaacaaaaga |
107 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||| |||||| |
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| T |
23073559 |
tcttagtccaaattggtatactggcaatgatagatcaatgatcctagccaactgtcttttccgttccggcggttgctcgattcttttgacaaataaaaga |
23073460 |
T |
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| Q |
108 |
tccttaaagaacagaagtatattgaaattgaagtgtttagtacgaacgcaccacggcgccagagatgactcttacacttgctgcactcaaaaggaagatg |
207 |
Q |
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| T |
23073459 |
tccttaaaaaacagaagcatactgaaattgaagtgtttagtacgaacgcaccacggcgcaagagaagactcttacaattgttgcattcaaaaggaagatg |
23073360 |
T |
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| Q |
208 |
agcagggtaggcttggtattcacttagggaaaactcttccaaaagcagcaacaagagcttttgttgatagtttaagggtaatttcacccaaaattttg |
305 |
Q |
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| T |
23073359 |
agcagggtaggcttggttttcatttagggaaaactctcccaaaagcagcaacaaaagtttttgttgacaatttaagggtaatttcacctaaaattttg |
23073262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 23078167 - 23077870
Alignment:
| Q |
8 |
tctttgtccaaattggtatactggcaatgataaatcaatgatcctagccaactgtcttttccgttctggaggttgcgcggttcttttgacaaacaaaaga |
107 |
Q |
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|||| |||||||||||||| |||| | | ||| |||||||||| ||||||| |||||||| || | || ||||| || |||||||||||||||||||| |
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| T |
23078167 |
tcttagtccaaattggtatcctggtagtaatagatcaatgatcttagccaattgtctttttcgcaccggcggttgtgccattcttttgacaaacaaaaga |
23078068 |
T |
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| Q |
108 |
tccttaaagaacagaagtatattgaaattgaagtgtttagtacgaacgcaccacggcgccagagatgactcttacacttgctgcactcaaaaggaagatg |
207 |
Q |
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| T |
23078067 |
tccttaaagaacaaaagtatattgaaattgaagtgtttagtaaggacgcaccacggcgccagagatgactcgtataactgttgccttaaaaaggaagacg |
23077968 |
T |
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| Q |
208 |
agcagggtaggcttggtattcacttagggaaaactcttccaaaagcagcaacaagagcttttgttgatagtttaagggtaatttcacccaaaattttg |
305 |
Q |
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||| ||| ||||| || | ||| ||||||||| || | ||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
23077967 |
agcgcggtgcagttggtttttatttatcgaaaactctcccgttggtagcaacaagagcttttgttgagaatttaagggtaatttcacccaaaattttg |
23077870 |
T |
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