View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4460_high_1 (Length: 406)
Name: NF4460_high_1
Description: NF4460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4460_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 22 - 325
Target Start/End: Original strand, 9037025 - 9037327
Alignment:
| Q |
22 |
acccatgaaataaagttcaatatgtatttttcccctnnnnnnntgtatattttctaaagggtaatatgtattg-ttattgttaatgaatgtccaaaacgc |
120 |
Q |
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| T |
9037025 |
acccgtgaaataaagttcaatatgtatttttcccctaaaaaaatgtatattttctaaagggtaatatgtattggttattgttaatgaatgtccaaaacgc |
9037124 |
T |
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| Q |
121 |
gtcttcaatctaaatattgaaccaaaaactaannnnnnnagaactgggcatcattttagtaaagcatctcattgaattaaattaatatgttgttctgaaa |
220 |
Q |
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| T |
9037125 |
gtcttcaatctaaatattgagccaaaaactaatttttt-agaactgggcatcattttagtaaagcatctcattgaattaaattaatatgttgttctgaaa |
9037223 |
T |
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| Q |
221 |
ttggtatgttcactaggctaagttacctctgttaattctcttacttcaaatcagtagacgacatttaaatgcacaatatgaaaggcatatcaaatggaca |
320 |
Q |
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| T |
9037224 |
ttggtatgtttacttggctaagttacctttgttaattctcttacttcaaatcagtagacgacatttaaatgcacaatatgtaa-gcatctcaaatgcaca |
9037322 |
T |
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| Q |
321 |
atatg |
325 |
Q |
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||||| |
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| T |
9037323 |
atatg |
9037327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 9037203 - 9037271
Alignment:
| Q |
326 |
aattaatacgttgttctgaaattggtatgctctcttggctaagttacgtttgttaattctcttacttca |
394 |
Q |
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|||||||| |||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |
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| T |
9037203 |
aattaatatgttgttctgaaattggtatgtttacttggctaagttacctttgttaattctcttacttca |
9037271 |
T |
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