View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4460_low_2 (Length: 280)
Name: NF4460_low_2
Description: NF4460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4460_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 22 - 268
Target Start/End: Original strand, 9037025 - 9037271
Alignment:
| Q |
22 |
acccatgaaataaagttcaatatgtatttttcccctnnnnnnntgtatattttctaaagggtaatatgtattg-ttattgttaatgaatgtccaaaacgc |
120 |
Q |
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| T |
9037025 |
acccgtgaaataaagttcaatatgtatttttcccctaaaaaaatgtatattttctaaagggtaatatgtattggttattgttaatgaatgtccaaaacgc |
9037124 |
T |
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| Q |
121 |
gtcttcaatctaaatattgaaccaaaaactaannnnnnnagaactgggcatcattttagtaaagcatctcattgaattaaattaatatgttgttctgaaa |
220 |
Q |
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| T |
9037125 |
gtcttcaatctaaatattgagccaaaaactaatttttt-agaactgggcatcattttagtaaagcatctcattgaattaaattaatatgttgttctgaaa |
9037223 |
T |
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| Q |
221 |
ttggtatgttcactaggctaagttacctctgttaattctcttacttca |
268 |
Q |
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|||||||||| ||| ||||||||||||| ||||||||||||||||||| |
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| T |
9037224 |
ttggtatgtttacttggctaagttacctttgttaattctcttacttca |
9037271 |
T |
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