View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4461-Insertion-1 (Length: 1159)

Name: NF4461-Insertion-1
Description: NF4461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4461-Insertion-1
NF4461-Insertion-1
[»] chr1 (13 HSPs)
chr1 (9-993)||(50262705-50263703)
chr1 (275-324)||(35473953-35474002)
chr1 (278-317)||(9872119-9872158)
chr1 (279-326)||(27127223-27127270)
chr1 (277-324)||(47719120-47719167)
chr1 (274-324)||(8253740-8253790)
chr1 (279-324)||(4295235-4295280)
chr1 (279-324)||(13794523-13794568)
chr1 (279-324)||(17283952-17283997)
chr1 (277-322)||(34486074-34486119)
chr1 (279-324)||(38448881-38448926)
chr1 (279-324)||(41769830-41769875)
chr1 (279-324)||(48730654-48730699)
[»] chr5 (7 HSPs)
chr5 (277-324)||(27679499-27679546)
chr5 (277-324)||(2839799-2839846)
chr5 (278-324)||(19068453-19068499)
chr5 (278-324)||(20370144-20370190)
chr5 (278-324)||(36321508-36321554)
chr5 (279-324)||(16133080-16133125)
chr5 (275-324)||(43108570-43108619)
[»] chr4 (11 HSPs)
chr4 (279-324)||(38416058-38416103)
chr4 (266-326)||(12439663-12439723)
chr4 (279-327)||(46676513-46676561)
chr4 (276-327)||(12058317-12058368)
chr4 (281-328)||(22279537-22279584)
chr4 (266-315)||(24488432-24488482)
chr4 (279-324)||(6087748-6087793)
chr4 (279-324)||(7230281-7230326)
chr4 (279-324)||(24785477-24785522)
chr4 (279-324)||(24822744-24822789)
chr4 (279-324)||(50442762-50442807)
[»] chr3 (8 HSPs)
chr3 (279-324)||(48315039-48315084)
chr3 (276-324)||(16980366-16980414)
chr3 (277-324)||(52119377-52119424)
chr3 (286-324)||(48376836-48376874)
chr3 (279-324)||(1149084-1149129)
chr3 (277-322)||(10926472-10926517)
chr3 (277-326)||(29631185-29631234)
chr3 (279-324)||(46469278-46469323)
[»] chr2 (9 HSPs)
chr2 (279-327)||(40099398-40099446)
chr2 (277-324)||(20120734-20120781)
chr2 (279-329)||(7413204-7413254)
chr2 (286-324)||(13000686-13000724)
chr2 (279-333)||(15654884-15654938)
chr2 (278-324)||(18231487-18231533)
chr2 (279-324)||(19179065-19179110)
chr2 (279-324)||(24593377-24593422)
chr2 (279-324)||(29599940-29599985)
[»] chr8 (7 HSPs)
chr8 (281-324)||(23816791-23816834)
chr8 (266-311)||(1200346-1200392)
chr8 (277-319)||(5179799-5179841)
chr8 (279-324)||(17704014-17704059)
chr8 (279-324)||(19778066-19778111)
chr8 (279-324)||(30623294-30623339)
chr8 (279-324)||(33451364-33451409)
[»] scaffold0026 (1 HSPs)
scaffold0026 (279-324)||(75326-75371)
[»] scaffold0007 (1 HSPs)
scaffold0007 (279-324)||(1572-1617)
[»] chr7 (3 HSPs)
chr7 (279-324)||(8615024-8615069)
chr7 (279-324)||(21050237-21050282)
chr7 (279-324)||(46987087-46987132)
[»] chr6 (1 HSPs)
chr6 (279-324)||(655764-655809)


Alignment Details
Target: chr1 (Bit Score: 664; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 9 - 993
Target Start/End: Complemental strand, 50263703 - 50262705
Alignment:
Q  9 ctatgttggtgtgtatatctgagatggatatattgaaggataggaacatggagttttgtgatggtttgggaagaa-aggtacaagggttgaatatgaagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||    
T  50263703 ctatgttggtgtgtatatctgagatggatatattgaaggataggaacatggagttttgtgatgctttgggaagaacaggtacaagggttgaatgtgaagt 50263604  T
Q  108 gtttaaaggtgttgg-catggttt-cagattc-aagtaaatctc-ggtctctaagataagagttgttc-aatgatggattgtgtcaaatcattc-tgggt 201  Q
     |||||||||||||| |||| ||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  50263603 ttttaaaggtgttggccatgctttccagattctaagtaaatctcaggtctctaagataagagttgttcaaatgatggattgtgtcaaatcattcatgggt 50263504  T
Q  202 tttgattctcagtttttatttgatcttgattaatgtttaaatatcnnnnnnnggtagtgtctgtggttcaaatctgaaccttggatatattatgcattat 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||| |||||||  |||||||||||||||||| ||||||||||||||||    
T  50263503 tttgattctcagtttttatttgatcttgattaatgtttaaatatctttttttggtggtgtctggtgttcaaatctgaaccttgcatatattatgcattat 50263404  T
Q  302 cgttaccaactgagctgagctcatggaacaaatgtttaaatgt-tgggtgtacatattggactcttggtcaatgtaaatattgaagaaaattgtgttcat 400  Q
    |||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  50263403 cgttaccaactgagctaagctcatgaaacaaatgtttaaatgtctgggtgtgcatattggactcttggtcaatgtaaatatcgaagaaaattgtgttcat 50263304  T
Q  401 aacattatagctattgattttg-nnnnnnnacatttagtaggattccattccatgaatctgcgcacttatttccaaaatataatatttgatatccacaaa 499  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  50263303 aacattatagctattgattttgttttttttacatttagtaggattccattccatgaatctgtgcacttatttccaaaatataatatttgaattccacaaa 50263204  T
Q  500 agaaaaaccttgctaaggcgatgagaaagtaataaatcattagtgatcaagtttgaacctagtgaacgagtactattacaaaaaccaaagtcacaaattg 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50263203 agaaaaaccttgctaaggcgatgagaaagtaataaatcattagtgatcaagtttaaacctagtgaacgagtactattacaaaaaccaaagtcacaaattg 50263104  T
Q  600 atttgagatatggtctaaactgaagttacgtggattaactttcttctttataatgcatatgttttaaaatagttttaatctaacaatgtatataaatcaa 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50263103 atttgagatatggtctaaactgaagttacgtggattaactttcttctttataatgcatatgttttaaaatagttttaatctaacaatgtatataaatcaa 50263004  T
Q  700 atattttaaaatatttttggtaaat---------atcgattcaacacatgacaatccaacacaaagcgaaaatcgtagagtagtaaatatatgatcatac 790  Q
    |||||||||||||||||||| ||||         ||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||     
T  50263003 atattttaaaatatttttgggaaatcaaagtatgatcgaatcaacacatgacaatcaaacacaaagtgaaaatcgtagagtagtaaatatatgatcata- 50262905  T
Q  791 cgttacaactctac-atatatatggatcctaaaataaccgagtagtaaataaaactggccatgggagcattagcttagatgattgggacttccgctcata 889  Q
    |||||||||| ||| |||||||| |||| |||||||||||||||||||||||||||| | ||||   ||||||||||||||||| |||||||||||||||    
T  50262904 cgttacaact-tacaatatatat-gatcataaaataaccgagtagtaaataaaactgccaatgg--acattagcttagatgatt-ggacttccgctcata 50262810  T
Q  890 ttaggcgtggattgaggttaaatagtgaacttctttgttagtatgggt-aagtaaataaattatgtacattccttatgcatggtgaagagagatttatat 988  Q
    ||||  || ||||||| |||||| | ||||||||||||||||||| || |||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  50262809 ttagctgtcgattgagtttaaattgagaacttctttgttagtatgtgtaaagtaaataaattatgtacaatccatatgcatggtaaagagagatttatat 50262710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 35474002 - 35473953
Alignment:
Q  275 ctgaaccttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||||||| ||||||||||||||||| ||||||| |||||| ||||||    
T  35474002 ctgaaccttgcatatattatgcattatccttaccaattgagctaagctca 35473953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 9872119 - 9872158
Alignment:
Q  278 aaccttggatatattatgcattatcgttaccaactgagct 317  Q
    ||||||| ||||||||||||||||| ||||||||||||||    
T  9872119 aaccttgcatatattatgcattatccttaccaactgagct 9872158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 27127270 - 27127223
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctcatg 326  Q
    |||||| ||||||||||||||||| |||| ||||||||| ||||||||    
T  27127270 accttgtatatattatgcattatccttactaactgagctaagctcatg 27127223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 47719120 - 47719167
Alignment:
Q  277 gaaccttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||||| ||||||||||||||||| |||||||||||| | ||||||    
T  47719120 gaaccttgcatatattatgcattatccttaccaactgagttaagctca 47719167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 8253790 - 8253740
Alignment:
Q  274 tctgaaccttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    ||||||||||| |||||||||||||| ||  ||||||||||||| ||||||    
T  8253790 tctgaaccttgcatatattatgcattgtccataccaactgagctaagctca 8253740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 4295280 - 4295235
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    ||||||||||||||||||||||||   |||||||||||| ||||||    
T  4295280 accttggatatattatgcattatccaaaccaactgagctaagctca 4295235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 13794523 - 13794568
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| ||||||||||||||||| ||| |||||||||| ||||||    
T  13794523 accttgcatatattatgcattatccttatcaactgagctaagctca 13794568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 17283997 - 17283952
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  17283997 accttgcatatattatgcattgtccttaccaactgagctaagctca 17283952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 34486119 - 34486074
Alignment:
Q  277 gaaccttggatatattatgcattatcgttaccaactgagctgagct 322  Q
    |||||||| |||||||||||| | || |||||||||||||||||||    
T  34486119 gaaccttgcatatattatgcactgtcattaccaactgagctgagct 34486074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 38448881 - 38448926
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  38448881 accttgcatatattatgcattgtccttaccaactgagctaagctca 38448926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 41769830 - 41769875
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    ||||||||||||||||||||||||   |||||||||||| ||||||    
T  41769830 accttggatatattatgcattatccaaaccaactgagctaagctca 41769875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 48730654 - 48730699
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| || ||||||||||| || |||||||||||||||||||||    
T  48730654 accttgcatttattatgcattgtccttaccaactgagctgagctca 48730699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 27679546 - 27679499
Alignment:
Q  277 gaaccttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||||||    
T  27679546 gaaccttgcatatattatgcattatctttaccaactgagctaagctca 27679499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 2839846 - 2839799
Alignment:
Q  277 gaaccttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    ||||||||||||||||||||||||||   |||||||||||| ||||||    
T  2839846 gaaccttggatatattatgcattatccaaaccaactgagctaagctca 2839799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 19068453 - 19068499
Alignment:
Q  278 aaccttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    ||||||| |||||||||||||||||  ||||||||||||| ||||||    
T  19068453 aaccttgcatatattatgcattatccataccaactgagctaagctca 19068499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 20370144 - 20370190
Alignment:
Q  278 aaccttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    ||||||| |||||||||||||||||  ||||||||||||| ||||||    
T  20370144 aaccttgtatatattatgcattatccctaccaactgagctaagctca 20370190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 36321508 - 36321554
Alignment:
Q  278 aaccttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    ||||||| |||||||||||||| || |||||||||||||| ||||||    
T  36321508 aaccttgcatatattatgcattgtccttaccaactgagctaagctca 36321554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 16133080 - 16133125
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  16133080 accttgcatatattatgcattgtccttaccaactgagctaagctca 16133125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 43108619 - 43108570
Alignment:
Q  275 ctgaaccttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||||||| |||||||||||||| || |||||||||||| | ||||||    
T  43108619 ctgaaccttgcatatattatgcattgtccttaccaactgagttaagctca 43108570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 38416103 - 38416058
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| ||||||||||||||||| |||||||||||||| ||||||    
T  38416103 accttgcatatattatgcattatccttaccaactgagctaagctca 38416058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 12439723 - 12439663
Alignment:
Q  266 ggttcaaatctgaaccttggatatattatgcattatcgttaccaactgagctgagctcatg 326  Q
    |||||||||| |||||||| |||||||||||||| || ||| |||||||||| || |||||    
T  12439723 ggttcaaatccgaaccttgcatatattatgcattgtccttatcaactgagctaagttcatg 12439663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 46676513 - 46676561
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctcatgg 327  Q
    |||||| |||||||||||||| || |||||||||||||| |||||||||    
T  46676513 accttgcatatattatgcattgtccttaccaactgagctaagctcatgg 46676561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 12058368 - 12058317
Alignment:
Q  276 tgaaccttggatatattatgcattatcgttaccaactgagctgagctcatgg 327  Q
    ||||||||| ||||||||||||||||| ||||| |||||||| | |||||||    
T  12058368 tgaaccttgcatatattatgcattatccttaccgactgagctaaactcatgg 12058317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 22279537 - 22279584
Alignment:
Q  281 cttggatatattatgcattatcgttaccaactgagctgagctcatgga 328  Q
    |||| |||||||||||||| || |||||||||||||| ||||||||||    
T  22279537 cttgcatatattatgcattgtccttaccaactgagctaagctcatgga 22279584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 24488482 - 24488432
Alignment:
Q  266 ggttcaaatct-gaaccttggatatattatgcattatcgttaccaactgag 315  Q
    ||||||||||| |||||||| |||||||||||||| || ||||||||||||    
T  24488482 ggttcaaatctcgaaccttgtatatattatgcattgtcattaccaactgag 24488432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 6087793 - 6087748
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||||||  ||||||||||||| ||||||    
T  6087793 accttgcatatattatgcattatctataccaactgagctaagctca 6087748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 7230326 - 7230281
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  7230326 accttgcatatattatgcattgtccttaccaactgagctaagctca 7230281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 24785477 - 24785522
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  24785477 accttgtatatattatgcattgtccttaccaactgagcttagctca 24785522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 24822789 - 24822744
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  24822789 accttgtatatattatgcattgtccttaccaactgagcttagctca 24822744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 50442762 - 50442807
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||||||  ||||||||||||| ||||||    
T  50442762 accttgcatatattatgcattatccctaccaactgagctaagctca 50442807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 48315039 - 48315084
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| ||||||||||||||||| |||||||||||||| ||||||    
T  48315039 accttgcatatattatgcattatccttaccaactgagctaagctca 48315084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 16980366 - 16980414
Alignment:
Q  276 tgaaccttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    ||||||||| |||||||||||||| || |||||||||||||| ||||||    
T  16980366 tgaaccttgcatatattatgcattgtccttaccaactgagctaagctca 16980414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 52119424 - 52119377
Alignment:
Q  277 gaaccttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||||| |||||||||||||| || |||||||||||||| ||||||    
T  52119424 gaaccttgcatatattatgcattgtccttaccaactgagctaagctca 52119377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 48376874 - 48376836
Alignment:
Q  286 atatattatgcattatcgttaccaactgagctgagctca 324  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  48376874 atatattatgcattatctttaccaactgagctaagctca 48376836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 1149084 - 1149129
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  1149084 accttgcatatattatgcattgtccttaccaactgagctaagctca 1149129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 10926517 - 10926472
Alignment:
Q  277 gaaccttggatatattatgcattatcgttaccaactgagctgagct 322  Q
    |||||||| |||||||||||||| || |||||||||||||| ||||    
T  10926517 gaaccttgcatatattatgcattgtccttaccaactgagctaagct 10926472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 29631234 - 29631185
Alignment:
Q  277 gaaccttggatatattatgcattatcgttaccaactgagctgagctcatg 326  Q
    |||||||| |||||||||||||| ||  ||||||||||||| ||||||||    
T  29631234 gaaccttgcatatattatgcattgtccataccaactgagctaagctcatg 29631185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 46469323 - 46469278
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  46469323 accttgaatatattatgcattgtccttaccaactgagctaagctca 46469278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 40099398 - 40099446
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctcatgg 327  Q
    |||||| |||||||||||||| || |||||||||||||| |||||||||    
T  40099398 accttgcatatattatgcattgtccttaccaactgagctaagctcatgg 40099446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 20120734 - 20120781
Alignment:
Q  277 gaaccttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||||| |||||||||||||| || |||||||||||||| ||||||    
T  20120734 gaaccttgcatatattatgcattgtccttaccaactgagctaagctca 20120781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 7413204 - 7413254
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctcatggaa 329  Q
    |||||| |||||||||||||| || |||||||||||||| |||||| ||||    
T  7413204 accttgtatatattatgcattgtccttaccaactgagctaagctcacggaa 7413254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 13000724 - 13000686
Alignment:
Q  286 atatattatgcattatcgttaccaactgagctgagctca 324  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  13000724 atatattatgcattatctttaccaactgagctaagctca 13000686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 15654884 - 15654938
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctcatggaacaaa 333  Q
    |||||| |||| |||||||||||| |||||||||||||| |||||| || |||||    
T  15654884 accttgcatattttatgcattatccttaccaactgagctaagctcacgggacaaa 15654938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 18231487 - 18231533
Alignment:
Q  278 aaccttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    ||||||| |||||||||||||| || |||||||||||||| ||||||    
T  18231487 aaccttgcatatattatgcattgtccttaccaactgagctaagctca 18231533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 19179065 - 19179110
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  19179065 accttgcatatattatgcattgtccttaccaactgagctaagctca 19179110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 24593422 - 24593377
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  24593422 accttgcatatattatgcattgtccttaccaactgagctaagctca 24593377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 29599985 - 29599940
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    ||||||||||||||||||||||||   |||||||||||| ||||||    
T  29599985 accttggatatattatgcattatccaaaccaactgagctaagctca 29599940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 23816834 - 23816791
Alignment:
Q  281 cttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||    
T  23816834 cttgcatatattatgcattatccttaccaactgagctaagctca 23816791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 1200346 - 1200392
Alignment:
Q  266 ggttcaaatc-tgaaccttggatatattatgcattatcgttaccaac 311  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  1200346 ggttcaaatcctgaaccttgcatatattatgcattatctttaccaac 1200392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 319
Target Start/End: Complemental strand, 5179841 - 5179799
Alignment:
Q  277 gaaccttggatatattatgcattatcgttaccaactgagctga 319  Q
    |||||||| |||||||||||||| || ||||||||||||||||    
T  5179841 gaaccttgtatatattatgcattgtccttaccaactgagctga 5179799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 17704059 - 17704014
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  17704059 accttgcatatattatgcattgtccttaccaactgagctaagctca 17704014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 19778111 - 19778066
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  19778111 accttgcatatattatgcattgtccttaccaactgagctaagctca 19778066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 30623339 - 30623294
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  30623339 accttgcatatattatgcattgtccttaccaactgagctaagctca 30623294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 33451364 - 33451409
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||||||  ||||||||||||| ||||||    
T  33451364 accttgcatatattatgcattatccataccaactgagctaagctca 33451409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 75371 - 75326
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  75371 accttgcatatattatgcattgtccttaccaactgagcttagctca 75326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 1617 - 1572
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||| ||||||||||||||||| | ||||||    
T  1617 accttgcatatattatgcactatcgttaccaactgagttaagctca 1572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 8615069 - 8615024
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  8615069 accttgcatatattatgcattgtccttaccaactgagctaagctca 8615024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 21050237 - 21050282
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  21050237 accttgcatatattatgcattgtccttaccaactgagctaagctca 21050282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 46987132 - 46987087
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| || |||||||||||||| ||||||    
T  46987132 accttgcatatattatgcattgtccttaccaactgagctaagctca 46987087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 655764 - 655809
Alignment:
Q  279 accttggatatattatgcattatcgttaccaactgagctgagctca 324  Q
    |||||| |||||||||||||| ||| ||||||||||||| ||||||    
T  655764 accttgcatatattatgcattgtcgataccaactgagctaagctca 655809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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