View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4461-Insertion-2 (Length: 1103)

Name: NF4461-Insertion-2
Description: NF4461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4461-Insertion-2
NF4461-Insertion-2
[»] chr4 (19 HSPs)
chr4 (23-684)||(7259421-7260088)
chr4 (813-1088)||(7259012-7259292)
chr4 (248-340)||(32439897-32439989)
chr4 (285-339)||(47006102-47006156)
chr4 (263-335)||(44434022-44434094)
chr4 (247-330)||(24993276-24993359)
chr4 (255-309)||(6334913-6334967)
chr4 (255-309)||(6335863-6335917)
chr4 (285-339)||(37061972-37062026)
chr4 (813-930)||(54147977-54148091)
chr4 (263-335)||(35415717-35415789)
chr4 (285-339)||(41580318-41580372)
chr4 (290-339)||(35196743-35196792)
chr4 (289-337)||(8037894-8037942)
chr4 (247-339)||(45105566-45105657)
chr4 (256-335)||(30508800-30508878)
chr4 (261-335)||(4965121-4965195)
chr4 (247-325)||(48215734-48215812)
chr4 (278-335)||(1913958-1914015)
[»] chr5 (16 HSPs)
chr5 (249-339)||(20906283-20906373)
chr5 (250-333)||(20919570-20919653)
chr5 (813-865)||(11334931-11334983)
chr5 (247-339)||(36880009-36880101)
chr5 (257-331)||(9474857-9474931)
chr5 (912-1024)||(24137360-24137475)
chr5 (248-355)||(26995174-26995279)
chr5 (258-383)||(29048590-29048716)
chr5 (247-334)||(37866930-37867017)
chr5 (289-359)||(32746351-32746423)
chr5 (258-335)||(34873524-34873601)
chr5 (248-339)||(4799613-4799704)
chr5 (285-339)||(24229421-24229475)
chr5 (249-335)||(32077909-32077995)
chr5 (256-310)||(35503586-35503640)
chr5 (249-355)||(17540907-17541015)
[»] chr3 (18 HSPs)
chr3 (249-330)||(49828171-49828252)
chr3 (247-335)||(1272051-1272139)
chr3 (268-355)||(35936688-35936777)
chr3 (264-355)||(38207295-38207388)
chr3 (268-339)||(35570594-35570665)
chr3 (247-330)||(12010787-12010872)
chr3 (877-927)||(16462750-16462800)
chr3 (260-310)||(53950272-53950322)
chr3 (263-335)||(9174116-9174188)
chr3 (279-358)||(31351413-31351492)
chr3 (247-298)||(49975515-49975566)
chr3 (248-338)||(51460116-51460217)
chr3 (256-307)||(53669615-53669666)
chr3 (247-337)||(21452772-21452862)
chr3 (247-337)||(21457946-21458036)
chr3 (249-339)||(21595527-21595617)
chr3 (286-335)||(1815256-1815305)
chr3 (247-296)||(36226896-36226945)
[»] chr8 (7 HSPs)
chr8 (247-334)||(24585567-24585654)
chr8 (256-362)||(34142671-34142779)
chr8 (248-335)||(10658617-10658704)
chr8 (249-310)||(43012751-43012812)
chr8 (264-356)||(6913328-6913422)
chr8 (268-339)||(9280585-9280656)
chr8 (285-339)||(25487548-25487602)
[»] chr1 (13 HSPs)
chr1 (268-339)||(35097229-35097300)
chr1 (249-338)||(32686515-32686604)
chr1 (280-356)||(40491130-40491208)
chr1 (264-355)||(16910033-16910126)
chr1 (261-358)||(42048457-42048555)
chr1 (302-341)||(11982200-11982239)
chr1 (256-339)||(21781205-21781288)
chr1 (263-366)||(10423024-10423129)
chr1 (285-335)||(11330953-11331003)
chr1 (285-335)||(11488974-11489024)
chr1 (249-339)||(21822946-21823035)
chr1 (912-957)||(15629658-15629703)
chr1 (249-298)||(36523715-36523764)
[»] scaffold0002 (1 HSPs)
scaffold0002 (249-334)||(427594-427679)
[»] chr6 (5 HSPs)
chr6 (877-1024)||(28063232-28063382)
chr6 (289-339)||(18688966-18689016)
chr6 (247-335)||(26472640-26472729)
chr6 (278-339)||(10663903-10663963)
chr6 (285-338)||(19636450-19636503)
[»] chr7 (15 HSPs)
chr7 (272-355)||(44972044-44972127)
chr7 (256-355)||(26387631-26387732)
chr7 (250-328)||(33138584-33138662)
chr7 (266-339)||(47230585-47230659)
chr7 (285-338)||(3265331-3265384)
chr7 (249-310)||(7359316-7359377)
chr7 (247-310)||(5793812-5793875)
chr7 (256-339)||(37257605-37257688)
chr7 (877-927)||(21814210-21814260)
chr7 (247-332)||(47230585-47230671)
chr7 (877-934)||(11828245-11828302)
chr7 (822-865)||(3889161-3889204)
chr7 (817-863)||(3901905-3901951)
chr7 (285-339)||(44184003-44184057)
chr7 (268-362)||(30863553-30863649)
[»] chr2 (2 HSPs)
chr2 (249-356)||(37141197-37141306)
chr2 (285-339)||(19064298-19064352)
[»] scaffold0061 (1 HSPs)
scaffold0061 (264-330)||(63620-63686)
[»] scaffold0017 (1 HSPs)
scaffold0017 (264-330)||(134946-135012)
[»] scaffold0265 (1 HSPs)
scaffold0265 (249-339)||(9774-9863)


Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 23 - 684
Target Start/End: Complemental strand, 7260088 - 7259421
Alignment:
Q  23 attatgattgttcacgaactatcttgaattaaattaaaaatgatgattacatcatggaaagtactatggatattaagatgtaagcatacaataatttgtc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7260088 attatgattgttcacgaactatcttgaattaaattaaaaatgatgattacatcatggaaagtactatggatattaagatgtaagcatacaataatttgtc 7259989  T
Q  123 tattttatgttcgtataataaataattatggatattttcaaacgaagcccatgattctaggaaattcggaaggatgcaaacgaagccaataagtatggat 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7259988 tattttatgttcgtataataaataattatggatattttcaaacgaagccaatgattctaggaaattcggaaggatgcaaacgaagccaataagtatggat 7259889  T
Q  223 attttcaaacgaagtcgatgattgattttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattcta 322  Q
    |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7259888 attttcaaacgaagtcgatgattgattttgcacacgcaatcaatcaaaatattttgaattgacacgtaaattaaaaatattaattgatatgacaattcta 7259789  T
Q  323 aattttttgattggttgcgtgcaaaattattttaaaccgttaatccacttgcattaaactccggaaaataaatagtttctagctgataannnnnnnnnnn 422  Q
    ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||               
T  7259788 aatgttttgattgattgcgtgcaaaattgttttaaaccgttaatccacttgcattaaactccggaaaataaatagtttccagctgataatttttattttt 7259689  T
Q  423 nnnnnnaaatagcatgagcaacccggggatttgatataagtttggtgtaggaggtaaattttgtgtatagaacattgt--------nnnnnnnnnnnnnn 514  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                          
T  7259688 atttttaaatagcatgagcaacccggggatttgatataagtttggtgtaggaggtaaattttgtgtatagaacattgtaaaaaaaaaaaaaaaaaaaaaa 7259589  T
Q  515 ctcaacaatatctgaaaaacattgacttcccaatggtaaaatttaaacattgtcctttttcttatgttcgattaattctctcttctgtttatttgatcgg 614  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  7259588 ctcaacaatatctg--gaacattgacttcccaatggtaaaatttaaacattgtcctttttcatatgttcgattaattctctcttctgtttatttgattgg 7259491  T
Q  615 ttttatccctcattgtttcttatgttttgattggtgattctttaatgattattttgatcgttgatcccca 684  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7259490 ttttatccctcattgtttcttatgttttgattggtgattctctaatgattattttgatcgttgatcccca 7259421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 813 - 1088
Target Start/End: Complemental strand, 7259292 - 7259012
Alignment:
Q  813 attggttcttatgtatggttgtttctccctatcggttcttttgtctggtttggagttgaatttattcttctgtttggatagtttctctctttggctggtt 912  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7259292 attggttcttatgtatggttgtttctcc-tatcggttcttttgtctggtttggagttgaatttattcttctgtttggatagtttttctctttggctggtt 7259194  T
Q  913 gatggttcttgctgctctctcttcgatgataacacattttggttgttgcactccataggttatactataagccaatttggtttattttcctggt--attt 1010  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||  ||||    
T  7259193 gatggttcttgctgctctctcttcgatgataactcattttggttgttgcactccataggttatactataagccgatttgatttattttcctggttaattt 7259094  T
Q  1011 gtaacaagctt-aaacttagt-agtttcagcttggaggggatattg-tag-agcttatggtgcg-ttgtttctagttatattg 1088  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||||| ||| ||||||||||||| ||||||| ||||||||||    
T  7259093 gtaacaagcttaaaacttagtaagtttcagctt-gaggggatattgttagaagcttatggtgcgtttgtttcaagttatattg 7259012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 248 - 340
Target Start/End: Complemental strand, 32439989 - 32439897
Alignment:
Q  248 ttttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgc 340  Q
    |||||||||||||||||||||||| ||| ||| ||| ||| | ||| |||||||||||||||| ||| |||||||||| ||||||||| ||||    
T  32439989 ttttgcatacacaaccaatcaaaacattatgagttgtcacgtgaataaaaaatattaattgatgtgataattctaaatattttgattgattgc 32439897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 47006156 - 47006102
Alignment:
Q  285 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||    
T  47006156 cacataaattaaaaacattagttgatatgacaattctaaatattttgattggttg 47006102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 44434022 - 44434094
Alignment:
Q  263 caatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    ||||||||| |||  |||||||||||||||||||||||||| ||| || |||||| ||||||| |||||||||    
T  44434022 caatcaaaacattaagaattgacacataaattaaaaatatttattaatgtgacaactctaaatgttttgattg 44434094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 24993276 - 24993359
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaatttttt 330  Q
    |||||||| ||| || ||||||||||| | ||||||| ||| ||||||||||| ||||| |||| |||||||||||||| ||||    
T  24993276 attttgcacacataatcaatcaaaatactatgaattgccacgtaaattaaaaacattaaatgatgtgacaattctaaatgtttt 24993359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 6334913 - 6334967
Alignment:
Q  255 tacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattga 309  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||||||||||    
T  6334913 tacacaaactatcaaaacattctgaattgacacataaattaaaaatattaattga 6334967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 6335863 - 6335917
Alignment:
Q  255 tacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattga 309  Q
    ||||||| | ||||||| ||| |||||||||||||||||||||||||||||||||    
T  6335863 tacacaaactatcaaaacattctgaattgacacataaattaaaaatattaattga 6335917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 37062026 - 37061972
Alignment:
Q  285 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    ||||||||||||||  |||||||||| |||||||||||||| |||||||||||||    
T  37062026 cacataaattaaaatcattaattgatgtgacaattctaaatgttttgattggttg 37061972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 813 - 930
Target Start/End: Original strand, 54147977 - 54148091
Alignment:
Q  813 attggttcttatgtatggttgtttctccctatcggttcttttgtctggtttggagttgaatttattcttctgtttggatagtttctctctttggctggtt 912  Q
    |||||||||| |||||||||| ||||||||| |  ||  ||||| |||||| |  ||||| |  |||||||  ||||||| |||||||||||||||| ||    
T  54147977 attggttcttctgtatggttgcttctccctaccaatt--tttgtttggtttagt-ttgaaatggttcttctacttggataatttctctctttggctgatt 54148073  T
Q  913 gatggttcttgctgctct 930  Q
    ||||||||||||||||||    
T  54148074 gatggttcttgctgctct 54148091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 35415717 - 35415789
Alignment:
Q  263 caatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    ||||||||| ||| ||| ||||||| ||||||||||| |||||||||| |||| ||||||||| || ||||||    
T  35415717 caatcaaaacattatgatttgacacgtaaattaaaaacattaattgatgtgacgattctaaatgttatgattg 35415789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 41580318 - 41580372
Alignment:
Q  285 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    ||||||||||| || |||||||||||||||||||||  ||| |||||||||||||    
T  41580318 cacataaattacaattattaattgatatgacaattcagaatgttttgattggttg 41580372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 35196743 - 35196792
Alignment:
Q  290 aaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    |||||||||| |||||||||| || ||||||||||| |||||||||||||    
T  35196743 aaattaaaaacattaattgatgtgtcaattctaaatgttttgattggttg 35196792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 8037894 - 8037942
Alignment:
Q  289 taaattaaaaatattaattgatatgacaattctaaattttttgattggt 337  Q
    |||||||||||||||||||||| || | ||||||||| |||||||||||    
T  8037894 taaattaaaaatattaattgatgtggcgattctaaatattttgattggt 8037942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 339
Target Start/End: Original strand, 45105566 - 45105657
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    |||||||| ||| ||  ||| |||||||||| ||||  |||||||||||||| ||||||||||  |||||||| ||||| |||||||| ||||    
T  45105566 attttgcacacataattaattaaaatattttaaattaccacataaattaaaa-tattaattgacttgacaattataaatattttgatttgttg 45105657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 30508878 - 30508800
Alignment:
Q  256 acacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    |||||||| ||||||| ||| | ||||| ||||||||||||||| |||||| ||| || ||||| ||||| |||||||||    
T  30508878 acacaaccgatcaaaacattctaaattg-cacataaattaaaaacattaatcgatgtggcaattttaaatgttttgattg 30508800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 4965195 - 4965121
Alignment:
Q  261 accaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    |||||||||||  || | ||||| ||| |||||||| ||||||||||||| |||| ||| ||||| |||||||||    
T  4965195 accaatcaaaacgttctaaattgccacgtaaattaacaatattaattgatgtgacgattataaatattttgattg 4965121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 48215812 - 48215734
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaat 325  Q
    |||||||| | |||| |||| |||||||| | | ||| ||||||||| ||||| ||||||||||  |||||||||||||    
T  48215812 attttgcacatacaatcaattaaaatattataagttgtcacataaataaaaaacattaattgatgcgacaattctaaat 48215734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 1914015 - 1913958
Alignment:
Q  278 gaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    |||||| | ||||||||||||| || ||||||| |||||||| ||||| |||||||||    
T  1914015 gaattgccgcataaattaaaaacataaattgatgtgacaattataaatattttgattg 1913958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 1e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 20906373 - 20906283
Alignment:
Q  249 tttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    ||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||| ||||  |||| ||||||||| ||||||| |||||    
T  20906373 tttgcatacacaatcaatcaaaatattttaaattgccacgtaaattaaaaatattatttgaagtgacgattctaaatgttttgatcggttg 20906283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 20919653 - 20919570
Alignment:
Q  250 ttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgat 333  Q
    |||||||||||||||||||||| ||||| ||||| ||| ||||||||||| |||| ||||| |||| ||||||||| |||||||    
T  20919653 ttgcatacacaaccaatcaaaacattttaaattgccacgtaaattaaaaacattatttgatgtgacgattctaaatattttgat 20919570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 813 - 865
Target Start/End: Complemental strand, 11334983 - 11334931
Alignment:
Q  813 attggttcttatgtatggttgtttctccctatcggttcttttgtctggtttgg 865  Q
    |||||||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  11334983 attggttcttttgtatggttgtttctctctatcggttcttttgtttggtttgg 11334931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 339
Target Start/End: Complemental strand, 36880101 - 36880009
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    |||||||| | |||| ||||||||| ||||| ||||| |||||| |||||| | ||||||||||||||  ||||||||| |||||||| ||||    
T  36880101 attttgcacatacaatcaatcaaaacattttaaattgtcacatacattaaatacattaattgatatgaagattctaaatgttttgattagttg 36880009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 331
Target Start/End: Complemental strand, 9474931 - 9474857
Alignment:
Q  257 cacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttg 331  Q
    ||||||||||||||| ||| |||||||  ||||||||||||||||||||| ||| |||| ||| ||||| |||||    
T  9474931 cacaaccaatcaaaacattatgaattgcaacataaattaaaaatattaatcgatgtgacgattttaaatgttttg 9474857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 912 - 1024
Target Start/End: Original strand, 24137360 - 24137475
Alignment:
Q  912 tgatggttcttgctgctctctcttcgatgataacacattttggttgttgcactccataggttatactataagccaatttggtttattttcctgg---tat 1008  Q
    |||||||||||||||||||||||  || |||||| ||||||||||| ||| || ||| |||| | |||  |||  |||||||||||||| ||||    ||    
T  24137360 tgatggttcttgctgctctctctatgaagataactcattttggttgctgctcttcattggttctgctagcagctgatttggtttatttttctgggttaat 24137459  T
Q  1009 ttgtaacaagcttaaa 1024  Q
    ||||||||||||||||    
T  24137460 ttgtaacaagcttaaa 24137475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 355
Target Start/End: Original strand, 26995174 - 26995279
Alignment:
Q  248 ttttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgcgtgcaaa 347  Q
    ||||||| ||||||||||  |||| |||  |||||  ||||||||||||||||||||||||   |||| ||| ||||| |||| |||| ||| |||||||    
T  26995174 ttttgcacacacaaccaa--aaaacattcagaattctcacataaattaaaaatattaattggcgtgacgattttaaatattttaattgattgtgtgcaaa 26995271  T
Q  348 attatttt 355  Q
    ||||||||    
T  26995272 attatttt 26995279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 383
Target Start/End: Original strand, 29048590 - 29048716
Alignment:
Q  258 acaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggt--tgcgtgcaaaattatttt 355  Q
    |||||||||||||| ||||| ||||| ||||| |||| |||| |||||||||| |||  ||| ||||| |||||||||||  || |||||||||| |||     
T  29048590 acaaccaatcaaaacattttaaattgtcacat-aattgaaaacattaattgatgtgatgattataaatattttgattggttgtgtgtgcaaaattgtttc 29048688  T
Q  356 aaaccgttaatccacttgcattaaactc 383  Q
    ||||  | ||||||||  ||||||||||    
T  29048689 aaactatcaatccactatcattaaactc 29048716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 334
Target Start/End: Complemental strand, 37867017 - 37866930
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgatt 334  Q
    ||||| || ||| ||||| | ||||||||| |||||  ||| ||||||||||| ||||||| || |||||||||||||| ||||||||    
T  37867017 attttacacacataaccagttaaaatatttcgaattagcacgtaaattaaaaacattaattcatgtgacaattctaaatattttgatt 37866930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 32746351 - 32746423
Alignment:
Q  289 taaattaaaaatattaattgatatgacaattctaaattttttgattggttgcgtg--caaaattattttaaac 359  Q
    |||||||||||||||||||||| ||  |||| ||||| ||||||||||||| |||  ||||||| ||||||||    
T  32746351 taaattaaaaatattaattgatgtggaaattataaatgttttgattggttgtgtgtacaaaattgttttaaac 32746423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 34873601 - 34873524
Alignment:
Q  258 acaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    |||||||||||||| ||| ||||||| ||| |||||| |||| |||||||||| |||| ||| ||||| |||| ||||    
T  34873601 acaaccaatcaaaacattctgaattgccacgtaaatttaaaacattaattgatgtgacgattttaaatgtttttattg 34873524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 339
Target Start/End: Original strand, 4799613 - 4799704
Alignment:
Q  248 ttttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    ||||||||||| || ||||||||  ||| | ||| | ||||||||||||||||||||| | |||| || ||| ||||| |||||||| ||||    
T  4799613 ttttgcatacataatcaatcaaatcattctaaatagccacataaattaaaaatattaactaatataaccattttaaatgttttgattagttg 4799704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 24229475 - 24229421
Alignment:
Q  285 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    ||||||||||||||  ||||||||| ||||||||||  ||| |||||||||||||    
T  24229475 cacataaattaaaatcattaattgaaatgacaattcagaatattttgattggttg 24229421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 32077995 - 32077909
Alignment:
Q  249 tttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    |||||| ||| || ||||||||| ||| ||||||  ||||||||||||||| | |||||||| ||  |||| ||||| |||||||||    
T  32077995 tttgcacacaaaatcaatcaaaacattatgaattatcacataaattaaaaagagtaattgatttggtaattttaaatgttttgattg 32077909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 35503640 - 35503586
Alignment:
Q  256 acacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgat 310  Q
    |||||| ||||||||| ||  | ||||| ||||||||||||||||||||||||||    
T  35503640 acacaaacaatcaaaacatcctcaattgtcacataaattaaaaatattaattgat 35503586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 355
Target Start/End: Original strand, 17540907 - 17541015
Alignment:
Q  249 tttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggt--tgcgtgcaa 346  Q
    |||||| ||| |||||||||||| ||||| ||||| | || |||||||||| || ||||||| |  | ||||||| | |||||||| ||  || ||||||    
T  17540907 tttgcacacataaccaatcaaaacattttaaattgtctcacaaattaaaaacatgaattgatgttgcgattctaagtgttttgattagttgtgtgtgcaa 17541006  T
Q  347 aattatttt 355  Q
    |||||||||    
T  17541007 aattatttt 17541015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 5e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 49828171 - 49828252
Alignment:
Q  249 tttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaatttttt 330  Q
    |||||| |||||| |||| |||||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||| ||||    
T  49828171 tttgcacacacaatcaattaaaatattttgaattgccacgtaaattaaaaacattaattcatatgacaattctaaatgtttt 49828252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 247 - 335
Target Start/End: Original strand, 1272051 - 1272139
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    |||||||| ||||||||||||||||||||  |||||| |  |||||||| ||| ||||||||||||  ||||||||||| |||||||||    
T  1272051 attttgcacacacaaccaatcaaaatattcagaattgccgtataaattagaaacattaattgatatttcaattctaaatattttgattg 1272139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 35936777 - 35936688
Alignment:
Q  268 aaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgcg--tgcaaaattatttt 355  Q
    |||| ||||| ||||| |||||||||||||||||||||||||| ||  |||||||||| |||||||| |||| |  ||||||||||||||    
T  35936777 aaaacattttaaattgtcacataaattaaaaatattaattgatttggtaattctaaatattttgatttgttgtgtatgcaaaattatttt 35936688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 264 - 355
Target Start/End: Original strand, 38207295 - 38207388
Alignment:
Q  264 aatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggt--tgcgtgcaaaattatttt 355  Q
    ||||||||||||   ||||| ||||||||||||||| |||||||||| |||||||||||||| |||| ||||||  || ||||||| |||||||    
T  38207295 aatcaaaatattcataattgccacataaattaaaaacattaattgatgtgacaattctaaatgtttttattggtcgtgtgtgcaaagttatttt 38207388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 35570665 - 35570594
Alignment:
Q  268 aaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    |||| |||||||||||  || |||||||||||||||||||||| || ||||| ||||| |||||||||||||    
T  35570665 aaaacattttgaattgttacgtaaattaaaaatattaattgatgtggcaattttaaatgttttgattggttg 35570594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 12010787 - 12010872
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattt--tgaattgacacataaattaaaaatattaattgatatgacaattctaaatttttt 330  Q
    |||||||| ||||||  ||| |||||||||  | ||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  12010787 attttgcacacacaattaattaaaatatttaattaattgtcacgtaaattaaaaatattaattcatatgacaattctaaatgtttt 12010872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 877 - 927
Target Start/End: Original strand, 16462750 - 16462800
Alignment:
Q  877 ttcttctgtttggatagtttctctctttggctggttgatggttcttgctgc 927  Q
    |||||||| ||||||  ||||||||||||||| ||||||||||||||||||    
T  16462750 ttcttctgcttggatgatttctctctttggcttgttgatggttcttgctgc 16462800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 53950322 - 53950272
Alignment:
Q  260 aaccaatcaaaatattttgaattgacacataaattaaaaatattaattgat 310  Q
    |||| ||||||||||||||||||  ||| ||||||||||||||||||||||    
T  53950322 aaccgatcaaaatattttgaattaccacgtaaattaaaaatattaattgat 53950272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 9174116 - 9174188
Alignment:
Q  263 caatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    ||||||||||||||||| ||| ||| ||||| ||||||||||||| || || | ||| ||||| |||||||||    
T  9174116 caatcaaaatattttgatttgtcacttaaataaaaaatattaattaatgtggcgattataaatattttgattg 9174188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 31351492 - 31351413
Alignment:
Q  279 aattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgcgtgcaaaattattttaaa 358  Q
    ||||| ||| ||||||||||| |||| ||| | |  ||||| ||||| ||||||||||||| |||||||||| |||||||    
T  31351492 aattgccacttaaattaaaaacattacttgttgtagcaattttaaatgttttgattggttgtgtgcaaaattgttttaaa 31351413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 49975566 - 49975515
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaa 298  Q
    |||||||| | |||| ||||||||| ||||||||||| ||||||||||||||    
T  49975566 attttgcacaaacaatcaatcaaaacattttgaattgtcacataaattaaaa 49975515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 338
Target Start/End: Original strand, 51460116 - 51460217
Alignment:
Q  248 ttttgcatacacaaccaatcaaaatattttgaattga-----------cacataaattaaaaatattaattgatatgacaattctaaattttttgattgg 336  Q
    ||||||| ||||||||||||||||||||||||||||            ||||||||||||||  |||||||||| |||||||||  ||| ||||||||||    
T  51460116 ttttgcacacacaaccaatcaaaatattttgaattgctacatttgatccacataaattaaaatcattaattgatgtgacaattcagaatgttttgattgg 51460215  T
Q  337 tt 338  Q
    ||    
T  51460216 tt 51460217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 53669615 - 53669666
Alignment:
Q  256 acacaaccaatcaaaatattttgaattgacacataaattaaaaatattaatt 307  Q
    |||||| |||||||||||||| |||||| ||| ||||||||||| |||||||    
T  53669615 acacaatcaatcaaaatatttagaattgtcacgtaaattaaaaacattaatt 53669666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 337
Target Start/End: Complemental strand, 21452862 - 21452772
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggt 337  Q
    |||||||| |||||||||||||||| ||| | | ||| ||  ||||||||||| |||| ||||| |||| ||| ||||| || ||||||||    
T  21452862 attttgcacacacaaccaatcaaaacattctaatttgtcatgtaaattaaaaacattatttgatgtgacgattttaaatgttctgattggt 21452772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 337
Target Start/End: Complemental strand, 21458036 - 21457946
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggt 337  Q
    |||||||| |||||||||||||||| ||| | | ||| ||  ||||||||||| |||| ||||| |||| ||| ||||| || ||||||||    
T  21458036 attttgcacacacaaccaatcaaaacattctaatttgtcatgtaaattaaaaacattatttgatgtgacgattttaaatgttctgattggt 21457946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 21595527 - 21595617
Alignment:
Q  249 tttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    |||||| | |||||||||||||| ||||||||||  || | |||||||| | |||||||| | ||||  || ||| |||||||||||||||    
T  21595527 tttgcacatacaaccaatcaaaacattttgaattcccataaaaattaaagacattaattggtgtgacggttttaatttttttgattggttg 21595617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 1815256 - 1815305
Alignment:
Q  286 acataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    |||||||||||||||||||||| || || | ||||||||| |||||||||    
T  1815256 acataaattaaaaatattaattaatgtggcgattctaaatattttgattg 1815305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 36226896 - 36226945
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattttgaattgacacataaattaa 296  Q
    |||||||| |||||||||||||||||||| | ||||| ||||| ||||||    
T  36226896 attttgcacacacaaccaatcaaaatattctaaattgccacattaattaa 36226945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 7e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 247 - 334
Target Start/End: Original strand, 24585567 - 24585654
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgatt 334  Q
    |||||| | |||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||| |  ||||||||||| ||||||||    
T  24585567 attttgtacacacaaccaatcaaaatattatgaattgtcacgtaaattaaaaacattaattgatttagcaattctaaatgttttgatt 24585654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 34142779 - 34142671
Alignment:
Q  256 acacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgc--gtgcaaaattatt 353  Q
    |||| ||||||||||| ||| | ||||| ||||||||||||||||||||||| ||||  | ||||||||| ||||||||| ||||   ||||||||||||    
T  34142779 acacgaccaatcaaaacattctaaattgccacataaattaaaaatattaatttatatagcgattctaaatgttttgattgattgctaatgcaaaattatt 34142680  T
Q  354 ttaaaccgt 362  Q
    || ||||||    
T  34142679 ttgaaccgt 34142671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 335
Target Start/End: Complemental strand, 10658704 - 10658617
Alignment:
Q  248 ttttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    ||||||| |||||||||||||||| |||| |||||||||| ||||||||||| |||||||| | |||  | ||||||| |||||||||    
T  10658704 ttttgcacacacaaccaatcaaaacatttcgaattgacacgtaaattaaaaacattaattgttgtgatgaatctaaatgttttgattg 10658617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 43012751 - 43012812
Alignment:
Q  249 tttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgat 310  Q
    |||||| ||| || ||||||||| ||||||||||| |||||||||||||||||| |||||||    
T  43012751 tttgcacacataatcaatcaaaagattttgaattgccacataaattaaaaatatgaattgat 43012812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 356
Target Start/End: Original strand, 6913328 - 6913422
Alignment:
Q  264 aatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg--cgtgcaaaattatttta 356  Q
    |||||||| ||||| ||||| |  |||| |||||||||||||||||| |  ||||||||||| | ||||||| |||   ||||||||||||||||    
T  6913328 aatcaaaacattttaaattgtcgtataatttaaaaatattaattgatttagcaattctaaatatgttgattgattgtatgtgcaaaattatttta 6913422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 9280656 - 9280585
Alignment:
Q  268 aaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    |||| |||| |||||| || | ||||||||||||||||||||| |||||||| ||||| ||| ||| |||||    
T  9280656 aaaacatttagaattgtcatacaaattaaaaatattaattgatgtgacaattttaaatgtttagataggttg 9280585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 25487548 - 25487602
Alignment:
Q  285 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    ||||||||||||||  |||||||||| |||||||||  ||| |||||||||||||    
T  25487548 cacataaattaaaatcattaattgatgtgacaattcagaatgttttgattggttg 25487602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 7e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 35097229 - 35097300
Alignment:
Q  268 aaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    |||| ||||| | ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  35097229 aaaacattttaatttgacacataaattaaaaatattaattgatatgtcaattttaaatattttgattggttg 35097300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 32686515 - 32686604
Alignment:
Q  249 tttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggtt 338  Q
    |||||||||||||| |||||||||||||  | |||  ||||| |||| ||||||||||||||||| ||||||||||  ||||||||||||    
T  32686515 tttgcatacacaactaatcaaaatatttatagttgctacatatattagaaatattaattgatatggcaattctaaaagttttgattggtt 32686604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 280 - 356
Target Start/End: Complemental strand, 40491208 - 40491130
Alignment:
Q  280 attgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggt--tgcgtgcaaaattatttta 356  Q
    |||| ||||||||||||||| |||| ||||||||| |||| ||||| |||||||||||  || ||||||||||||||||    
T  40491208 attgtcacataaattaaaaacattatttgatatgataattttaaatattttgattggttgtgtgtgcaaaattatttta 40491130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 355
Target Start/End: Complemental strand, 16910126 - 16910033
Alignment:
Q  264 aatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggt--tgcgtgcaaaattatttt 355  Q
    |||||||| ||||  ||||  ||||||||||||||||||||||| || |||| ||| ||||| ||||||||| |  ||||||||||||||||||    
T  16910126 aatcaaaacatttcaaattaccacataaattaaaaatattaatttatgtgacgattataaatattttgattgattgtgcgtgcaaaattatttt 16910033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 358
Target Start/End: Complemental strand, 42048555 - 42048457
Alignment:
Q  261 accaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg--cgtgcaaaattattttaaa 358  Q
    ||||||||||| ||||| |||||  || |||||| ||||||||||||||| |||| ||||||||| | ||||||| |||   ||||||||||||||||||    
T  42048555 accaatcaaaacattttaaattgt-acgtaaatttaaaatattaattgatgtgactattctaaatgtcttgattgattgtatgtgcaaaattattttaaa 42048457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 11982239 - 11982200
Alignment:
Q  302 ttaattgatatgacaattctaaattttttgattggttgcg 341  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  11982239 ttaattgatatgacaattctaaatgttttgattggttgcg 11982200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 21781205 - 21781288
Alignment:
Q  256 acacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    ||||||| |||||||| ||||  ||||| ||| |||||||||||||||| ||||| | || ||||||||| ||||||| |||||    
T  21781205 acacaactaatcaaaacatttcaaattgccacgtaaattaaaaatattatttgatgttacgattctaaatgttttgatcggttg 21781288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 10423024 - 10423129
Alignment:
Q  263 caatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg--cgtgcaaaattattttaaacc 360  Q
    |||||||| ||| | || ||||||| |||||||||| ||||||||||  || ||||||||||| ||||||||| |||  ||||||||  | ||||||||     
T  10423024 caatcaaattatctagatttgacacgtaaattaaaattattaattgacgtggcaattctaaatgttttgattgattgcacgtgcaaatgtgttttaaacg 10423123  T
Q  361 gttaat 366  Q
    ||||||    
T  10423124 gttaat 10423129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 11331003 - 11330953
Alignment:
Q  285 cacataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    ||||||||||||||  |||||||||||||||||||| |||| |||||||||    
T  11331003 cacataaattaaaatcattaattgatatgacaattcaaaatattttgattg 11330953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 11489024 - 11488974
Alignment:
Q  285 cacataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    ||||||||||||||  |||||||||||||||||||| |||| |||||||||    
T  11489024 cacataaattaaaatcattaattgatatgacaattcaaaatattttgattg 11488974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 339
Target Start/End: Complemental strand, 21823035 - 21822946
Alignment:
Q  249 tttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    ||||||||||||| ||||||||| ||||  ||||| ||  ||||||||||| |||| ||||| |||  ||||||||| ||||||| |||||    
T  21823035 tttgcatacacaatcaatcaaaacatttcaaattg-catgtaaattaaaaacattatttgatgtgatgattctaaatgttttgatcggttg 21822946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 912 - 957
Target Start/End: Complemental strand, 15629703 - 15629658
Alignment:
Q  912 tgatggttcttgctgctctctcttcgatgataacacattttggttg 957  Q
    ||||||||||||||||||||||| ||| |||||| || ||||||||    
T  15629703 tgatggttcttgctgctctctctgcgaagataactcactttggttg 15629658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 36523764 - 36523715
Alignment:
Q  249 tttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaa 298  Q
    |||||||||||||| ||||| ||||||| |||||| ||||| ||||||||    
T  36523764 tttgcatacacaacgaatcagaatatttagaattgtcacatcaattaaaa 36523715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 249 - 334
Target Start/End: Complemental strand, 427679 - 427594
Alignment:
Q  249 tttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgatt 334  Q
    |||||| ||||||| ||||||||||||  |||||| |||||| |||||||| |||||||||| |||||||| ||||| ||||||||    
T  427679 tttgcacacacaactaatcaaaatattcagaattgtcacatatattaaaaacattaattgatgtgacaattttaaatgttttgatt 427594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 877 - 1024
Target Start/End: Complemental strand, 28063382 - 28063232
Alignment:
Q  877 ttcttctgtttggatagtttctctctttggctggttgatggttcttgctgctctctcttcgatgataacacattttggttgttgcactccataggttata 976  Q
    |||||||| ||||||  ||||||||||||||||||||||| || ||| | | ||||||  ||||| ||| || |||||||| ||| ||| || ||||||     
T  28063382 ttcttctgcttggatgatttctctctttggctggttgatgattgttgttacactctctatgatgacaactcactttggttgctgctctctattggttatg 28063283  T
Q  977 ctataagccaatttggtttattttcctgg---tatttgtaacaagcttaaa 1024  Q
    |||| |||  |||||||||||||| ||||    ||||||||||||||||||    
T  28063282 ctatcagctgatttggtttatttttctgggttaatttgtaacaagcttaaa 28063232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 18688966 - 18689016
Alignment:
Q  289 taaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    ||||||||||| |||||||||| |||||||| ||||| |||||||||||||    
T  18688966 taaattaaaaacattaattgatgtgacaattttaaatgttttgattggttg 18689016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 335
Target Start/End: Original strand, 26472640 - 26472729
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattt-tgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattg 335  Q
    |||||||| | |||| ||||||||| |||| ||||||  ||| ||||||||||| ||||| |||| ||||||||| |||| |||||||||    
T  26472640 attttgcacatacaaacaatcaaaagatttctgaattcccacgtaaattaaaaacattaagtgatgtgacaattcaaaatgttttgattg 26472729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 10663963 - 10663903
Alignment:
Q  278 gaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    |||||| ||||||||| ||||| ||||| |||| || ||||||||||| |||||||||||||    
T  10663963 gaattgtcacataaat-aaaaacattaaatgatgtggcaattctaaatgttttgattggttg 10663903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 19636503 - 19636450
Alignment:
Q  285 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggtt 338  Q
    ||||||||||||||  |||||||||| || | ||||||||| ||||||||||||    
T  19636503 cacataaattaaaatcattaattgatgtggcgattctaaatgttttgattggtt 19636450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 355
Target Start/End: Complemental strand, 44972127 - 44972044
Alignment:
Q  272 tattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgcgtgcaaaattatttt 355  Q
    ||||| ||||||  ||||||||||||||||||||||||| || ||||||| ||| ||||||||||||| ||| |||||| ||||    
T  44972127 tatttagaattgctacataaattaaaaatattaattgatgtggcaattctgaatattttgattggttgagtgaaaaattgtttt 44972044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 256 - 355
Target Start/End: Original strand, 26387631 - 26387732
Alignment:
Q  256 acacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggt--tgcgtgcaaaattatt 353  Q
    |||||| ||||||||| |||   ||||| |||||||| |||||| |||||||||| |||||||| ||||| |||||||||||  || |||||||||||||    
T  26387631 acacaatcaatcaaaacattcaaaattgccacataaactaaaaacattaattgatgtgacaattttaaatgttttgattggttgtgtgtgcaaaattatt 26387730  T
Q  354 tt 355  Q
    ||    
T  26387731 tt 26387732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 328
Target Start/End: Original strand, 33138584 - 33138662
Alignment:
Q  250 ttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaatttt 328  Q
    ||||| ||||||||||| |||| |||| |||||| |||||||||||||||   |||||||| ||||||||||| |||||    
T  33138584 ttgcacacacaaccaattaaaacatttagaattgtcacataaattaaaaacgctaattgatgtgacaattctatatttt 33138662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 47230585 - 47230659
Alignment:
Q  266 tcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaat-tttttgattggttg 339  Q
    |||||| |||| |||||| |||||||||||||||  |||||| || |||||||||||||| ||||||||||||||    
T  47230585 tcaaaacatttagaattgtcacataaattaaaaactttaattaatgtgacaattctaaatatttttgattggttg 47230659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 3265331 - 3265384
Alignment:
Q  285 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggtt 338  Q
    ||||||||||||||| |||||||||| |||||||||||||| |||| |||||||    
T  3265331 cacataaattaaaaacattaattgatgtgacaattctaaatattttaattggtt 3265384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 7359377 - 7359316
Alignment:
Q  249 tttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgat 310  Q
    ||||||||||||||||||||||| ||| ||||||| ||  ||||||||||| ||||||||||    
T  7359377 tttgcatacacaaccaatcaaaacattctgaattgtcatgtaaattaaaaacattaattgat 7359316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 5793812 - 5793875
Alignment:
Q  247 attttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgat 310  Q
    |||||||| ||||||| |||||||| ||||| ||||| ||| |||||||||||||||| |||||    
T  5793812 attttgcacacacaacaaatcaaaacattttaaattgtcacgtaaattaaaaatattatttgat 5793875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 37257605 - 37257688
Alignment:
Q  256 acacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    ||||||| |||||||| ||||  ||||| ||||||||||||||| |||||||||| ||   ||||| ||| |||||||||||||    
T  37257605 acacaactaatcaaaacatttcaaattgtcacataaattaaaaacattaattgatgtggggattctgaatgttttgattggttg 37257688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 877 - 927
Target Start/End: Original strand, 21814210 - 21814260
Alignment:
Q  877 ttcttctgtttggatagtttctctctttggctggttgatggttcttgctgc 927  Q
    |||||||| ||||||  ||||||||||||||| ||||||||||||||||||    
T  21814210 ttcttctgcttggatgatttctctctttggcttgttgatggttcttgctgc 21814260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 332
Target Start/End: Complemental strand, 47230671 - 47230585
Alignment:
Q  247 attttgcatacacaaccaatcaaaa-tattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttga 332  Q
    ||||| || |||||||||||||||| ||||| |||||| ||||| |||||||  | |||||| || |||||||||||||| ||||||    
T  47230671 attttacacacacaaccaatcaaaaatatttagaattgtcacattaattaaagtttttaatttatgtgacaattctaaatgttttga 47230585  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 877 - 934
Target Start/End: Complemental strand, 11828302 - 11828245
Alignment:
Q  877 ttcttctgtttggatagtttctctctttggctggttgatggttcttgctgctctctct 934  Q
    |||||||  |||||| |||||||||||||| || ||||||||||||||| ||||||||    
T  11828302 ttcttctacttggatggtttctctctttggttgattgatggttcttgctactctctct 11828245  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 822 - 865
Target Start/End: Original strand, 3889161 - 3889204
Alignment:
Q  822 tatgtatggttgtttctccctatcggttcttttgtctggtttgg 865  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||    
T  3889161 tatgtatggttgcttctccctaccggttcttttgtttggtttgg 3889204  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 817 - 863
Target Start/End: Original strand, 3901905 - 3901951
Alignment:
Q  817 gttcttatgtatggttgtttctccctatcggttcttttgtctggttt 863  Q
    |||| |||||||||||| ||||||||| |||||||||||| ||||||    
T  3901905 gttcgtatgtatggttgcttctccctaccggttcttttgtatggttt 3901951  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 44184003 - 44184057
Alignment:
Q  285 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    ||||||||||||||  |||||||||| |||||||||  ||| |||||||||||||    
T  44184003 cacataaattaaaatcattaattgatgtgacaattcagaatgttttgattggttg 44184057  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 362
Target Start/End: Complemental strand, 30863649 - 30863553
Alignment:
Q  268 aaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgcgtgc--aaaattattttaaaccgt 362  Q
    |||||||||  ||||| ||| ||||||||||| ||||||  ||||||||||| ||||| |||||| || |||  |||  ||||||||||| ||||||    
T  30863649 aaaatatttaaaattgtcacgtaaattaaaaacattaatcaatatgacaattttaaatattttgaatgattgtatgcaaaaaattattttgaaccgt 30863553  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 356
Target Start/End: Complemental strand, 37141306 - 37141197
Alignment:
Q  249 tttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttgcgt--gcaa 346  Q
    |||||||||| | |||||||||| ||| ||||||| ||||||||||||||| |||||||||| ||  |||||||||| ||| || || ||| ||  ||||    
T  37141306 tttgcatacatagccaatcaaaacattctgaattgccacataaattaaaaacattaattgatgtggaaattctaaatgtttagagtgattgtgtgcgcaa 37141207  T
Q  347 aattatttta 356  Q
    ||||||||||    
T  37141206 aattatttta 37141197  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 19064298 - 19064352
Alignment:
Q  285 cacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    |||||||||||||| ||||||||||| || ||||||  ||| |||||||||||||    
T  19064298 cacataaattaaaattattaattgatgtggcaattcagaatgttttgattggttg 19064352  T

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Target: scaffold0061 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 63686 - 63620
Alignment:
Q  264 aatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaatttttt 330  Q
    ||||||||||||   ||||| ||||||||||||||| |||| ||||| |||||||||||||| ||||    
T  63686 aatcaaaatattcataattgccacataaattaaaaacattatttgatgtgacaattctaaatgtttt 63620  T

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Target: scaffold0017 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 264 - 330
Target Start/End: Original strand, 134946 - 135012
Alignment:
Q  264 aatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaatttttt 330  Q
    ||||||||||||   ||||| ||||||||||||||| |||| ||||| |||||||||||||| ||||    
T  134946 aatcaaaatattcataattgccacataaattaaaaacattatttgatgtgacaattctaaatgtttt 135012  T

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Target: scaffold0265 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 9774 - 9863
Alignment:
Q  249 tttgcatacacaaccaatcaaaatattttgaattgacacataaattaaaaatattaattgatatgacaattctaaattttttgattggttg 339  Q
    ||||||||||||| ||||||||| ||||  ||||| ||  ||||||||||| |||| ||||| |||  ||||||||| ||||||| |||||    
T  9774 tttgcatacacaatcaatcaaaacatttcaaattg-catgtaaattaaaaacattatttgatgtgatgattctaaatgttttgatcggttg 9863  T

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