View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4461-Insertion-4 (Length: 1041)
Name: NF4461-Insertion-4
Description: NF4461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4461-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 27755038 - 27754915
Alignment:
| Q |
15 |
ccataaaagtttatgtccttttacaaagtatgttaaacaaaattgaacaattacctcttcacagcaatataaagcaatgttacgattgtgaacaaacttg |
114 |
Q |
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| T |
27755038 |
ccataaaagtttatatccttttacaaagtatgttaaacaaagttgaacaattacctcttcactgcaatataaagcaatgttacgattgtgaacaaacttg |
27754939 |
T |
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| Q |
115 |
cgaagatatagctccagtcagcaa |
138 |
Q |
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| T |
27754938 |
cgaagatatagctccagtcagcaa |
27754915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 27751928 - 27751869
Alignment:
| Q |
162 |
taactgttgtttgagatgtttgttggggttgaaggaaggttttgggagaggtgtatccat |
221 |
Q |
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| T |
27751928 |
taactgttctttgagatgcttgttggggttgaaggagggtttggggagaggtgtatccat |
27751869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 45310761 - 45310700
Alignment:
| Q |
137 |
aattgttatgattaagagtagttactaactgttgtttgagatgtttgttggggttgaaggaa |
198 |
Q |
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| T |
45310761 |
aattgttatgattaagagtagttactaactgttgtttgagatgtttgttggggttgaaggaa |
45310700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 639
Target Start/End: Original strand, 46444454 - 46444610
Alignment:
| Q |
497 |
ttgtgaagttttctacatcttgcaagccatcacctat--------------atctttctctcttgtgatttgtcaatcttaaagtgagagaacttaactc |
582 |
Q |
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| T |
46444454 |
ttgtgaagttttctgcatcttgcaagccatcacctataatggtatttaccgatctttctctcttgtgagttgttaatgttaaagtgagataacttaactc |
46444553 |
T |
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| Q |
583 |
tagcttgnnnnnnnagtttgtgaattaaatcttgtatcttggtcacttcctcaaatt |
639 |
Q |
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| T |
46444554 |
ttgcatgtttttatagttgttgaatgaaatcttgtatcttggactcttccccaaatt |
46444610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 827 - 913
Target Start/End: Original strand, 46444811 - 46444900
Alignment:
| Q |
827 |
tgacagcatagatgaacattcat---tgagttgaagaaaggtcattccagatgatagaagtaaaagggtttgggacagttcacacccaac |
913 |
Q |
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| T |
46444811 |
tgacagcaaagatgaacattcatatttaaattgaataaaggtcattacaaatgatagaatcaatagggtttgggacagttcccacccaac |
46444900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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