View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4461-Insertion-6 (Length: 750)
Name: NF4461-Insertion-6
Description: NF4461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4461-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 719; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 719; E-Value: 0
Query Start/End: Original strand, 8 - 750
Target Start/End: Complemental strand, 8822829 - 8822087
Alignment:
| Q |
8 |
tttacctagttcataaggaagtgaaccggttaaccggttcatcgacaaatccaaatcagcaaggcggtaaatttttgtaactgaaaccggaatggaaccg |
107 |
Q |
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| T |
8822829 |
tttacctagttcatatggaagtgaaccggttaaccggttcatcgacaaatccaaatcagcaaggcggtaaattttcgtaactgaaaccggaatggaaccg |
8822730 |
T |
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| Q |
108 |
gttaattgattccggttcaacaacgcacggcttaacatttggagatttccaaaattaaccggaatcgaaccggttaaactgttgctgcttaaatcaagat |
207 |
Q |
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| T |
8822729 |
gttaattgattccggttcaacaacgcacggcttaacatttgaagatttccaaaattaaccggaatcgaaccggttaaactgttgctgcttaaatcaagat |
8822630 |
T |
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| Q |
208 |
gcttaagagaacatagttcaacgactgacgttggaatctcgccagagattgaattctcagcgaggttcagaacagtcagtcgttgtaactttccaatgtt |
307 |
Q |
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| T |
8822629 |
gcttaagagaacatagttcaacgactgacgttggaatctcgccagagattgaattctcagcgaggttcagaacagtcagtcgttgtaactttccaatgtt |
8822530 |
T |
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| Q |
308 |
caccggaatttttccggtgagctggtttccgataagatccaaaatgcggagattggagagagaagtgagacattgtggaatctcaccggagatagctttc |
407 |
Q |
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| T |
8822529 |
caccggaatttttccggtgagctggtttccgataagatccaaaatgcggagattggagagagaagtgagacattgtggaatctcaccggagatagctttc |
8822430 |
T |
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| Q |
408 |
caatcggcgagtatgaaggaagtgaggctgtcaattttgcaaatctccggtgagatttttccagtcatgtaaccggacttgccggattttgagatgattg |
507 |
Q |
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| T |
8822429 |
caatcggcgagtatgaaggaagtgaggctgtcaattttgcaaatctccggtgagatttttccggtcatgtaaccagacttgccggattttgagatgattg |
8822330 |
T |
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| Q |
508 |
gatcttctgactcgccacggaggttgatgtcggtgacacggccggtggtggagtcgcaactaacgccgtaccagtttacgcagcagttttcgccggacca |
607 |
Q |
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| T |
8822329 |
gatcttctgactcgccacggaggttgatgtcggtgacacggccggtggtggagtcgcaactaacgccgtaccagtttacgcagcagttttcgccggacca |
8822230 |
T |
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| Q |
608 |
tgtattgaagatgccgtggtagggttctttgagggatgctttgaaggataagagtgcggttctgtctgaaggagaacaaccgtgtacggtgagaatgacg |
707 |
Q |
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| T |
8822229 |
tgtattgaagatgccgtggtagggttctttgagggatgctttgaaggataagagtgcggttctgtctgacggagaacaaccgtgtacggtgagaatgacg |
8822130 |
T |
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| Q |
708 |
gtggcgagaaaaacggttacgacggagaacgtgaatgaagaag |
750 |
Q |
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| T |
8822129 |
gtggcgagaaaaacggttacgacggagaacgtgaatgaagaag |
8822087 |
T |
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Back To:
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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 503 - 549
Target Start/End: Original strand, 41998722 - 41998768
Alignment:
| Q |
503 |
gattggatcttctgactcgccacggaggttgatgtcggtgacacggc |
549 |
Q |
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| T |
41998722 |
gattggatcttctgactcgccgcggaggttgatatcggcgacgcggc |
41998768 |
T |
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