View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4461-Insertion-7 (Length: 684)
Name: NF4461-Insertion-7
Description: NF4461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4461-Insertion-7 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 634; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 7 - 684
Target Start/End: Complemental strand, 38312682 - 38312005
Alignment:
| Q |
7 |
aatatcatgaatgatgatgctattacatttggtgttagcattagttgtatttaactaaactctctacaatttcaagtttcaacaatattgatgttattgc |
106 |
Q |
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| T |
38312682 |
aatatcatgaatgatgatgctattacatttggtgttagcattagttgtatttaactaaactctctacaatttcaagtttcaacaatattgatgttattgc |
38312583 |
T |
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| Q |
107 |
gatatgaaacattgactctgttataatagtaaatagatgcttaacaatgagtgtaaaaagtgttacctatggcagctgtagaagtaagagtagcgataca |
206 |
Q |
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| T |
38312582 |
gatatgaaacattgactctgttataatagtaaatagatgcttaacaatgagtgtaaaaagtgttacctatggcagctgtagaagtaagagtagcgataca |
38312483 |
T |
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| Q |
207 |
atcatgtgaaattgaatggacattcgcagctgagctaaccacagaagcaaggttgtcgcgcttagctcacattgcttcggcagcctcaacacactgcacc |
306 |
Q |
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| T |
38312482 |
atcatgtgaaattgaatggacattcgcagctgagctaaccacagaagcaaggttgtaacacttagctcacattgctttggcagcctcaacacactgcacc |
38312383 |
T |
|
| Q |
307 |
gtaactaatatggcagccgaagcaatatccatgtttgtcttgtctatcttttcatccttgattggtgttgacgaggctgatgttgtggccacaatggaag |
406 |
Q |
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| T |
38312382 |
gtaactaatatggcagccgaagcaatatccatgtttgtcttgtctatcttttcatccttgattggtgttgacgaggctgctgttgtggccacaatggaag |
38312283 |
T |
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| Q |
407 |
ctaaagcagccacagtaatggtagtgtgctgctgagcattatgtattttgctttcctctttctttcaaccatcttcttacagttttaggtcctgaacaag |
506 |
Q |
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| T |
38312282 |
ctaaagcagccacagtaatagtagtgtgctgctgagcattatgtattttgctttcctctttctttcaaccatcttcttacagttttaggtcctgaacaag |
38312183 |
T |
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| Q |
507 |
tcgtgctgctgccaacagcagcagtttctcttccaccattagataatgggtgaatggaattgttttctcaggaaatatatagtgtgtgacttattagaaa |
606 |
Q |
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| T |
38312182 |
ttgtgctgctgccaacagcagcagttgctcttccaccattagataatgggtgaatggaattgttttctcaagaaatatatagtgtgcgacttattagaaa |
38312083 |
T |
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| Q |
607 |
aagctaatagagttgctcgtagcttagtaaaaactgattatatatgttgacaacatcgtcaaattgatctgaatgaca |
684 |
Q |
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| T |
38312082 |
aagctaatagagttgctcgtagcttagtaaaaattgattatatatgttgacaacatcgtcaaattgatctgaatgaca |
38312005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 105 - 571
Target Start/End: Complemental strand, 38268805 - 38268316
Alignment:
| Q |
105 |
gcgatatgaaacattgactctgttataatagtaaatagatgcttaacaatgagtgtaaaaagtgttacctatggcagctgtagaagtaagagtagcgata |
204 |
Q |
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| T |
38268805 |
gcgatatgaaacattgactaaattatattatgaaatagatgctcaatgatgtgggctaaaagtcttacctgtggcagctgcagcagtaagagtagtgata |
38268706 |
T |
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| Q |
205 |
caatcatgtgaaattgaatggacattcgcagctgagctaaccacagaagcaaggttgtcgcgcttagctcacattgcttcggcagcctcaacacactgca |
304 |
Q |
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| T |
38268705 |
tcatcatgagaac------gaacattcacagctgagctgaccaccgatgcaaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtg |
38268612 |
T |
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| Q |
305 |
ccgtaactaatatggcagccgaagcaatatccatgtttgtcttgtctatcttttcatccttgattggtgttgacgaggctgatgttgtggccacaatg-- |
402 |
Q |
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| T |
38268611 |
cggcaactagagtggcagccgaagcaacagccacgtctgtcttggccatcttctcatccttgttttgtgttgatgaatttgctgttgctgctgcaatggc |
38268512 |
T |
|
| Q |
403 |
----------gaagctaaagcagccacagtaatggtagtgtgctgctgagcattatgtattttgctttcctcttt-----------------ctttcaac |
475 |
Q |
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| T |
38268511 |
agctatagcagaagcaacagcagccacagtaatagtagcgtgcagctgagcattttgtgttctgctttcttctttcttcttttctcttctctctttcaac |
38268412 |
T |
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| Q |
476 |
catcttcttacagttttaggtcctgaacaagtcgtgctgctgccaacagcagcagtttctcttccaccattagataatgggtgaatggaattgttt |
571 |
Q |
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| T |
38268411 |
caccttcctacagttttaggtcctgaacaagccgtgccgttgccaacaccggcacttgctcttccaccattgaataatgggtgaatggaattgttt |
38268316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 682
Target Start/End: Complemental strand, 38268246 - 38268175
Alignment:
| Q |
611 |
taatagagttgctcgtagcttagtaaaaactgattatatatgttgacaacatcgtcaaattgatctgaatga |
682 |
Q |
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| T |
38268246 |
taatagagttgttcatagcgtagtaaaaatttattgtaaaccttgacaacatcgtcaaattcatctgaatga |
38268175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 463 - 506
Target Start/End: Original strand, 31707668 - 31707711
Alignment:
| Q |
463 |
tctttctttcaaccatcttcttacagttttaggtcctgaacaag |
506 |
Q |
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| T |
31707668 |
tctttctttcaaccatcttcctactgttttaggtcctgaacaag |
31707711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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