View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4461-Insertion-8 (Length: 507)

Name: NF4461-Insertion-8
Description: NF4461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4461-Insertion-8
NF4461-Insertion-8
[»] chr3 (1 HSPs)
chr3 (8-507)||(52584399-52584898)


Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 8 - 507
Target Start/End: Original strand, 52584399 - 52584898
Alignment:
Q  8 aggccttgttgtgtctggtgattattctcgtttgctgcaccaagtagatccatcaaatgtcttgtgtgactcatctcagaaccttgtgctagcccaatat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52584399 aggccttgttgtgtctggtgattattctcgtttgctgcaccaagtagatccatcaaatgtcttgtgtgactcatctcagaaccttgtgctagcccaatat 52584498  T
Q  108 tgttagaaaatgttccaagtgattcatgatatgcattgttgtttctcaaagaagatgaaacataaccaccacctagtagttcttggttctcaaattgatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52584499 tgttagaaaatgttccaagtgattcatgatatgcattgttgtttctcaaagaagatgaaacataaccaccacctagtagttcttggttctcaaattgatt 52584598  T
Q  208 ttgatgggtcatggagtttgacatcattaattgtagctagcnnnnnnngtctgagagaaagtgattgaaaaaataaactagttctatacttgtattgtat 307  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52584599 ttgatgggtcatggagtttgacatcattaattgtagctagctttttttgtctgagagaaagtgattgaataaataaactagttctatacttgtattgtat 52584698  T
Q  308 tgtgtcccttaagggaacaactcaattggaaaaatgaagcatgtgagttttgtgatgtggatctctctagaacagtgaaagaagagagatttttatggaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52584699 tgtgtcccttaagggaacaactcaattggaaaaatgaagcatgtgagttttgtgatgtggatctctctagaacagtgaaagaagagagatttttatggaa 52584798  T
Q  408 aaagagaaaaggagtgaaagggggaatcgaatcgaatcgaatcaacactgttttttacgtactgaagaaactatttgagcaaaaaagctagtatagtata 507  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52584799 aaggagaaaaggagtgaaagggggaatcgaatcgaatcgaatcaacactgttttttacgtactgaagaaactatttgagcaaaaaagctagtatagtata 52584898  T

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