View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4461_high_2 (Length: 684)

Name: NF4461_high_2
Description: NF4461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4461_high_2
NF4461_high_2
[»] chr5 (1 HSPs)
chr5 (21-666)||(43408569-43409216)


Alignment Details
Target: chr5 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 21 - 666
Target Start/End: Complemental strand, 43409216 - 43408569
Alignment:
Q  21 cagcgtgtaagccaaacatgttggcatggtgagcaagtggatattcagatttgctgaaggcagtaatatcaatagcaaaacaaggtttggttgttgtgaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43409216 cagcgtgtaagccaaacatgttggcatggtgagcaagtggatattcagatttgctgaaggcagtaatatcaatagcaaaacaaggtttggttgttgtgaa 43409117  T
Q  121 ggctgttcctactattccttgtccattaaaaaggtgatactcactgcacgcttcttggaatcccaatacatccatgtcaccaacataacaagctgaatca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43409116 ggctgttcctactattccttgtccattaaaaaggtgatactcactgcacgcttcttggaatcccaatacatccatgtcaccaacataacaagctgaatca 43409017  T
Q  221 accgttgatatgcagcaactcatagttgaaacaccacaacctgatgcaccactacttccctttcctcctccttgttgttgttgtaggcaaggagcccatg 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43409016 accgttgatatgcagcaactcatagttgaaacaccacaacctgatgcaccactacttccctttcctcctccttgttgttgttgtaggcaaggagcccatg 43408917  T
Q  321 ttagtgctaatggtaaattgtgcgtcttgcacactgaagccaacacttccattatctcgttcacggctgcttcatatagctcttcaaatacctaattatt 420  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43408916 ttagtgctaatggtaaattgtgcgtcttgcacactgacgccaacacttccattatctcgttcaccgctgcttcatatagctcttcaaatacctaattatt 43408817  T
Q  421 cattatcatatcatttttagaaacaattttatttagtttttgttgatttaatcaaatccagtactatgatctga---tgattgtttgc---ttaccttta 514  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||   |||||||||||   |||||||||    
T  43408816 cattatcatatcatttttagaaacaattttatatagtttttgttgatctaatcaaatccagtactatgatctgatgatgattgtttgctaattaccttta 43408717  T
Q  515 ctgcttgtgggatattcatgttgtgactacttctaaaatcaacagcctgcatcagcaaaagatggatccatattcaatctcatgtatgtttctaacattt 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43408716 ctgcttgtgggatattcatgttgtgactacttctaaaatcaacagcctgcatcagcaaaagatggatccatattcaatctcatgtatgtttctaacattt 43408617  T
Q  615 gttaatttaatttcaagaagaagtaacaaacatatatacctcaagagcatta 666  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||    
T  43408616 gttaatttaatttcaagaagaagtaacaaac----atacctcaagagcatta 43408569  T

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