View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4461_low_10 (Length: 269)
Name: NF4461_low_10
Description: NF4461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4461_low_10 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 304001 - 304232
Alignment:
| Q |
19 |
atatatgcagggactactacaggtgtactcacaaaatagatcaaagatgcaaagcaaccaaacaggtgcagagaattcaagagaagcctcccttgtataa |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
304001 |
atatatgcagggactactacaggtgtactcacaagatagatcaaagatgcaaagcaaccaaacaggtgcagagaattcaagagaagcctcccttgtataa |
304100 |
T |
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| Q |
119 |
gaccacctattacgaccaccacacttgtaacaaagacaatatcatcatatttgaacccacttctcctcatgatcacatattgcttagctttaacaacaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
304101 |
gaccacctattacgaccaccacacttgtaacaaagacaatatcatcatatttgaacccacttctcctcatgatcacatattgcttagctttaacaacaca |
304200 |
T |
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| Q |
219 |
ttcccaactccaacccaacaagattgtccctt |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
304201 |
ttcccaactccaacccaacaagattgtccctt |
304232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 12465970 - 12465843
Alignment:
| Q |
19 |
atatatgcagggactactacaggtgtactcacaaaatagatcaaagatgcaaagcaaccaaacaggtgcagagaattcaagagaagcctcccttgtataa |
118 |
Q |
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||||||||||| |||||||||||||||||||||| | |||||||||||| | ||||||| || ||||| ||||||||| | || |||||||||||||| |
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| T |
12465970 |
atatatgcaggaactactacaggtgtactcacaagtttgatcaaagatgcctaacaaccaagcatgtgcatagaattcaacaaaaacctcccttgtataa |
12465871 |
T |
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| Q |
119 |
gaccacctattacgaccaccacacttgt |
146 |
Q |
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| T |
12465870 |
gacaacctattatggtcaccacacttgt |
12465843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 12465785 - 12465736
Alignment:
| Q |
201 |
cttagctttaacaacacattcccaactccaacccaacaagattgtccctt |
250 |
Q |
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||||||||||| || ||||||||||||||||| ||||||| |||||||| |
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| T |
12465785 |
cttagctttaataatacattcccaactccaacaaaacaagaatgtccctt |
12465736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 479050 - 479177
Alignment:
| Q |
19 |
atatatgcagggactactacaggtgtactcacaaaatagatcaaagatgcaaagcaaccaaacaggtgcagagaattcaagagaagcctcccttgtataa |
118 |
Q |
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|||||| |||| |||||| |||||||||||||| ||||||||||||||| |||||||||| ||||| | ||||||||| || |||||||||||||| |
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| T |
479050 |
atatatacaggacctactataggtgtactcacaagtatgatcaaagatgcaaaacaaccaaacaagtgcataaaattcaagaaaatcctcccttgtataa |
479149 |
T |
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| Q |
119 |
gaccacctattacgaccaccacacttgt |
146 |
Q |
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|| ||| ||||| | ||||||||||||| |
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| T |
479150 |
gatcacttattatggccaccacacttgt |
479177 |
T |
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