View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4461_low_6 (Length: 329)
Name: NF4461_low_6
Description: NF4461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4461_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 14 - 305
Target Start/End: Original strand, 39603224 - 39603519
Alignment:
| Q |
14 |
catcatcagctctaaggatctttacttgctaagatacttgttgtgtagcagagacaacctttctc-catctgctatttcttgtatattcgtcattccttc |
112 |
Q |
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||||| || ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| || |
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| T |
39603224 |
catcagcaactctaaggatcattacttgctaagatacatgttgtgtagcagagacaacctttctctcatctgctatttcttttatattcatcattttgtc |
39603323 |
T |
|
| Q |
113 |
attaactagtgaagcctttggttcttccttagaggtagcagatgaa-gtgtg--tggtatcttggattgtggagaacatgaagactccatatctaaaaaa |
209 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||| || ||| ||||| ||||| ||||||| ||| |||| |||||||||||| |||| |
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| T |
39603324 |
attaactagtgaaacctttggttctcccttagaggtagcagataaaagtggaaatggtaacttgggttgtggacaacgtgaaaactccatatctacaaaa |
39603423 |
T |
|
| Q |
210 |
taaaatcaaataagtaagatccaaatcatgattgtttcaatcaccttgaacttgataattgtttcaatcaccttggagttcaagtggtagatataa |
305 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
39603424 |
taaaatcaaataagtaagatctaaatcatgattgtttcaatcaccttaaacttgataattgtttcaatcaccttggagttcaagtagtagacataa |
39603519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 14 - 279
Target Start/End: Original strand, 21827482 - 21827749
Alignment:
| Q |
14 |
catcatcagctctaaggatctttacttgctaagatacttgttgtgtagcagagacaacctttctc-catctgctatttcttgtatattcgtcattccttc |
112 |
Q |
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||||| || ||||||||||| |||||||||||||||| ||||| |||||||| ||| ||||||| |||| |||||||||||||||||| ||||||| || |
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| T |
21827482 |
catcagcaactctaaggatcattacttgctaagatacctgttgggtagcaga--caagctttctctcatccgctatttcttgtatattcatcattccgtc |
21827579 |
T |
|
| Q |
113 |
attaactagtgaagcctttggttcttccttagaggtagcagatgaagtgtg---tggtatcttggattgtggagaacatgaagactccatatctaaaaaa |
209 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||| |||| | ||| | ||||||||||||| ||||||||||||||||||||| |||| |
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| T |
21827580 |
attaactagtgaaacctttggttctcccttagaggtagcagataaagttggaaatggcaacttggattgtggacaacatgaagactccatatctacaaaa |
21827679 |
T |
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| Q |
210 |
taaaatcaaataagtaagatccaaatcatgattgtttcaatcaccttgaacttgataattgtttcaatca |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
21827680 |
taaaatcaaataagtaagatccaaatcatgattgtttcaatcaccttaaacttgataactgtttcaatca |
21827749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 43022122 - 43022325
Alignment:
| Q |
20 |
cagctctaaggatctttacttgctaagatacttgttgtgtagcagagacaacctttctc-catctgctatttcttgtatattcgtcattccttcattaac |
118 |
Q |
| |
|
|||||||| | ||||||||||||| ||||| || ||||||||||||||| ||||| || || | |||||||| |||||||| ||||||||||||||||| |
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| T |
43022122 |
cagctctaggcatctttacttgctctgatacctgctgtgtagcagagacatcctttatctcagcagctatttcctgtatatttgtcattccttcattaac |
43022221 |
T |
|
| Q |
119 |
tagtgaagcctttggttcttccttagaggtagcagatgaagtgtg----tggtatcttggattgtggagaacatgaagactccatatctaaaaaataaaa |
214 |
Q |
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| ||||| ||||||||||| |||| ||||||||||||||||| || ||||||||||| ||||| ||| ||||||||||||||| ||||||||| |
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| T |
43022222 |
ttgtgaaacctttggttctcccttggaggtagcagatgaagt-tgaagatggtatcttgggctgtgggcaacgagaagactccatatctggaaaataaaa |
43022320 |
T |
|
| Q |
215 |
tcaaa |
219 |
Q |
| |
|
||||| |
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|
| T |
43022321 |
tcaaa |
43022325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 42811742 - 42811883
Alignment:
| Q |
20 |
cagctctaaggatctttacttgctaagatacttgttgtgtagcagagacaacctttctc-catctgctatttcttgtatattcgtcattccttcattaac |
118 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| || |||||||||||||| |||||||| | | ||||||| |||||||| | ||||||||||||||| |
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| T |
42811742 |
cagctctagggatctttacttgctctgatacctgctgtgtagcagagacctcctttctctcggcaactatttcctgtatatttgccattccttcattaac |
42811841 |
T |
|
| Q |
119 |
tagtgaagcctttggttcttccttagaggtagcagatgaagt |
160 |
Q |
| |
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| ||||| ||||||||||| |||| ||||| ||||||||||| |
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| T |
42811842 |
ttgtgaaacctttggttctcccttggaggttgcagatgaagt |
42811883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 42811989 - 42812035
Alignment:
| Q |
221 |
aagtaagatccaaatcatgattgtttcaatcaccttgaacttgataa |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42811989 |
aagtaagatccaaatcatgattgtttcaatcaccttgaacttgataa |
42812035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 43022368 - 43022414
Alignment:
| Q |
221 |
aagtaagatccaaatcatgattgtttcaatcaccttgaacttgataa |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43022368 |
aagtaagatccaaatcatgattgtttcaatcaccttgaacttgataa |
43022414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 35061042 - 35061082
Alignment:
| Q |
224 |
taagatccaaatcatgattgtttcaatcaccttgaacttga |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
35061042 |
taagatccaaatcatgattgtttcaatcaccttgaacttga |
35061082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 35060818 - 35060899
Alignment:
| Q |
20 |
cagctctaaggatctttacttgctaagatacttgttgtgtagcagagacaacctttctc-catctgctatttcttgtatatt |
100 |
Q |
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|||||||| ||||||||||||||| ||||| || |||||||||||||| ||||| || || | |||||||| |||||||| |
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| T |
35060818 |
cagctctagggatctttacttgctctgatacctgctgtgtagcagagacctcctttttctcagcagctatttcctgtatatt |
35060899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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