View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4461_low_7 (Length: 313)
Name: NF4461_low_7
Description: NF4461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4461_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 186 - 313
Target Start/End: Original strand, 38716273 - 38716400
Alignment:
| Q |
186 |
gaattagatccaaaaaggaaccttgtttttatttcattctttatgggattttgagccaattataaaatttccatgcatgatctttgccttgagaacatga |
285 |
Q |
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| T |
38716273 |
gaattagatccaaaaaggaaccttgtttttatttcattctttatgggattttgagccaattataaaatttccatgcatgatctttgccttgagaacatga |
38716372 |
T |
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| Q |
286 |
tgaggctgatgagtctgttttgtttctt |
313 |
Q |
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| T |
38716373 |
tgaggctgatgagtctgttttgtttctt |
38716400 |
T |
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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 38716099 - 38716168
Alignment:
| Q |
17 |
tcagagctcacacttcaagattcacacatcatccaatcttgaaaacacaaaatcttcatacaagtttggc |
86 |
Q |
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| T |
38716099 |
tcagagctcacacttcaagattcacacatcatccaatcttgaaaacacaaaatcttcatacaagtttggc |
38716168 |
T |
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