View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4462-Insertion-2 (Length: 604)

Name: NF4462-Insertion-2
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4462-Insertion-2
NF4462-Insertion-2
[»] chr5 (8 HSPs)
chr5 (8-604)||(24005431-24006027)
chr5 (8-503)||(23940703-23941195)
chr5 (338-514)||(24112147-24112323)
chr5 (338-433)||(25613658-25613753)
chr5 (328-436)||(31261808-31261916)
chr5 (338-433)||(32430126-32430221)
chr5 (352-436)||(14307935-14308019)
chr5 (474-514)||(32430042-32430082)
[»] chr3 (3 HSPs)
chr3 (346-521)||(43694073-43694248)
chr3 (398-521)||(43685016-43685139)
chr3 (8-48)||(48445155-48445195)
[»] chr1 (4 HSPs)
chr1 (328-588)||(15498040-15498307)
chr1 (11-73)||(49178500-49178562)
chr1 (14-63)||(49171547-49171596)
chr1 (338-418)||(37997263-37997343)
[»] scaffold1089 (1 HSPs)
scaffold1089 (352-435)||(1239-1322)
[»] chr6 (3 HSPs)
chr6 (8-61)||(7871252-7871305)
chr6 (8-66)||(23951639-23951697)
chr6 (11-68)||(23950997-23951054)
[»] chr4 (1 HSPs)
chr4 (356-453)||(51016819-51016916)


Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 8 - 604
Target Start/End: Complemental strand, 24006027 - 24005431
Alignment:
Q  8 attctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaagatgggccccattatgttactcactcacagctctttgtttcgacg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24006027 attctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaagatgggccccattatgttactcactcacagctcttcgtttcgacg 24005928  T
Q  108 atgataccgtgaaagacgctgaaggcttcaatcgcttctgtggttttgtagataaactcatgctctttccttctgcggccaaccaacctatcaaaacgtt 207  Q
    |||||||||||||| ||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24005927 atgataccgtgaaaaacgttgatagcttcaatcgcttctgtggttttgtagataaactcatgctctttccttctgcgaccaaccaacctatcaaaacgtt 24005828  T
Q  208 tcacctcaaactctctcaattttataaagttgatcatcaaagcttccatgcatgggtagaagccataaaacaacgccgcgtcgaggaacttcatctcctc 307  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24005827 tcacctcaaactctctcgattttataaggttgatcatcaaagcttctatgcatgggtagaagccataaaactacgccgcgtcgaggaacttcatctcctc 24005728  T
Q  308 ctcgataatgtaacattgaagaatctcacgattttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  24005727 ctcgataatgtaacattgaagaatctcacgattttcacctccagaaccctagttgttgtcaaacttgcgagcttaaaagttgaaggtgaaaatttgtgtg 24005628  T
Q  408 ttgatcttccaaatctcaaaaccctacatctaagatatgtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtcctattctacaaaa 507  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||    
T  24005627 ttgatcttccaaatctcaaaaccctacatctaagatatgtttcttttgaaactcagaataatttcagtaaacttcttaaagcttgtcctattctacaaaa 24005528  T
Q  508 tttgcatgcttcttttctgatatataggagacatgatgaaaataataaagtagaagaattcaaacccttgttcttgtccaaattggttagagcccga 604  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24005527 tttgcatgcttcttttctgttatataggagagctgatgaaaataataaagtagaagaattcaaacccttgttcttgtccaaattggttagagcccga 24005431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 503
Target Start/End: Complemental strand, 23941195 - 23940703
Alignment:
Q  8 attctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaagatgggccccattatgttactcactcacagctctttgtttcgacg 107  Q
    ||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||| ||||||||| | || |||||||||||||||||| | ||| |||    
T  23941195 attctctcttttcttccaaccaagcttgctttctgcaccacccttctctccaaaaggtgggccccactctgctactcactcacagctcttcgcttcaacg 23941096  T
Q  108 atgataccgtgaaagacgctgaaggcttcaatcgcttctgtggttttgtagataaactcatgctctttccttctgcggccaaccaacctatcaaaacgtt 207  Q
     |||||| |||||||| |||||  ||||||||||||||||| ||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||    
T  23941095 gtgatacagtgaaagatgctgacagcttcaatcgcttctgtcgttttgtagataagctcatgctctctccttctgcgaccaaccaacccatcaaaacgtt 23940996  T
Q  208 tcacctcaaactctctcaattttataaagttgatcatcaaagcttccatgcatgggtagaagccataaaacaacgccgcgtcgaggaacttcatctcctc 307  Q
    |||| |||  ||||||| |  |||| ||||||||| |||||||||| ||||||||||||||||    ||||| ||||  |||||| |  ||||||||  |    
T  23940995 tcacttcatcctctctcgaggttatgaagttgatcgtcaaagcttcgatgcatgggtagaagctgccaaacatcgccaggtcgagaagtttcatctcacc 23940896  T
Q  308 ctcgataatgtaacattgaagaatctcacgattttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtg 407  Q
    ||| || | ||||||||   || |  ||| ||||| | ||||| ||||||||||| | ||||||||||||| ||||||||||||  ||| ||||||||||    
T  23940895 ctcaatgacgtaacatt---gagtaccacaatttttatctccaaaaccctagttgatctcaaacttgagagattaaaagttgaaactgataatttgtgtg 23940799  T
Q  408 ttgatcttccaaatctcaaaaccctacatctaagatatgtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtcctattctac 503  Q
    |||||||||||  ||||||||| |||||| |  |  ||||| ||||| | | ||||||| ||||||||||||||||||| |||||||| |||||||    
T  23940798 ttgatcttccatctctcaaaactctacatttgggtcatgttagttttcacaatcggaatgatttcatgaaacttcttaatgcttgtccaattctac 23940703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 338 - 514
Target Start/End: Original strand, 24112147 - 24112323
Alignment:
Q  338 attttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatc 437  Q
    |||||||||||   ||||||| ||||| ||||||||||| ||||| | ||||||  | | ||||| | |||||||||||||  |||||||| ||||  |     
T  24112147 attttcacctctcaaaccctatttgttctcaaacttgagtggttacatgttgaaaattataatttctatgttgatcttccatctctcaaaatcctaggtt 24112246  T
Q  438 taagatatgtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtcctattctacaaaatttgcat 514  Q
    | | ||||||||||| ||||| || |||| ||||||| || |||||||| |||||||||||||||||| ||||||||    
T  24112247 tgaaatatgtttgttgtgaaaatcagaatgatttcattaagcttcttaatgcttgtcctattctacaagatttgcat 24112323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 338 - 433
Target Start/End: Original strand, 25613658 - 25613753
Alignment:
Q  338 attttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaacccta 433  Q
    ||||||||||||| ||||||||||||| | ||||||||||| |||  |||| ||| |||||||||||||||||||||||||  |||||||| ||||    
T  25613658 attttcacctccaaaaccctagttgttctgaaacttgagagattagtagttaaagctgaaaatttgtgtgttgatcttccatctctcaaaatccta 25613753  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 436
Target Start/End: Original strand, 31261808 - 31261916
Alignment:
Q  328 gaatctcacgattttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaa 427  Q
    ||||| ||| ||||| ||||||  |||||||||| || | ||||||||||| |||  |||| ||| |||||||||||||||||||||||||  |||||||    
T  31261808 gaatcccacaattttaacctcccaaaccctagttattctgaaacttgagagattagtagttaaagctgaaaatttgtgtgttgatcttccatctctcaaa 31261907  T
Q  428 accctacat 436  Q
    | |||||||    
T  31261908 atcctacat 31261916  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 433
Target Start/End: Complemental strand, 32430221 - 32430126
Alignment:
Q  338 attttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaacccta 433  Q
    |||||||||||||||||||| ||| || |||||||| |||  |||||| ||| || ||| ||||||||| |||||||||||   ||||||||||||    
T  32430221 attttcacctccagaacccttgttattctcaaacttcagaacttaaaaattgtagctgataatttgtgttttgatcttccatcgctcaaaacccta 32430126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 436
Target Start/End: Original strand, 14307935 - 14308019
Alignment:
Q  352 aaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacat 436  Q
    |||||| |||||| |||||||||||||| ||  ||||| | ||||   ||| ||||||||||||||| | || ||||||||||||    
T  14307935 aacccttgttgttctcaaacttgagagggtacgagttgcaagtgatcgtttttgtgttgatcttccatagcttaaaaccctacat 14308019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 514
Target Start/End: Complemental strand, 32430082 - 32430042
Alignment:
Q  474 tgaaacttcttaaagcttgtcctattctacaaaatttgcat 514  Q
    ||||||||||||| ||||||||||||||| || ||||||||    
T  32430082 tgaaacttcttaatgcttgtcctattctagaagatttgcat 32430042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 346 - 521
Target Start/End: Complemental strand, 43694248 - 43694073
Alignment:
Q  346 ctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatat 445  Q
    |||| ||||||||||| || | |||||||||  ||||||| || ||  ||| ||||||||||||||||||||| | ||||||||||||||| | |  |||    
T  43694248 ctcccgaaccctagttattctgaaacttgagcagttaaaaattcaatctgataatttgtgtgttgatcttccatagctcaaaaccctacatttcaactat 43694149  T
Q  446 gtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtcctattctacaaaatttgcatgcttctt 521  Q
    ||| ||||| ||| |  |||| ||||||| ||||||||||| ||||||||  |||||||| |||||||||||||||    
T  43694148 gttagttttaaaaataagaatgatttcataaaacttcttaatgcttgtccacttctacaagatttgcatgcttctt 43694073  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 398 - 521
Target Start/End: Complemental strand, 43685139 - 43685016
Alignment:
Q  398 aatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatatgtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtccta 497  Q
    |||||||||||| ||||||||   ||||||||||||||| | | ||| ||| ||||| ||| |  |||| ||||| ||||||||||||| ||||||||||    
T  43685139 aatttgtgtgttaatcttccatcgctcaaaaccctacatttcaaatacgttagttttaaaaataagaatgatttcttgaaacttcttaatgcttgtccta 43685040  T
Q  498 ttctacaaaatttgcatgcttctt 521  Q
    || ||||| ||||| |||||||||    
T  43685039 ttgtacaagatttggatgcttctt 43685016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 48445155 - 48445195
Alignment:
Q  8 attctctcttttcttccaaccaaacttgctttcaccacaac 48  Q
    |||||||||||||| ||||||||||||||| | ||||||||    
T  48445155 attctctcttttctcccaaccaaacttgctgtaaccacaac 48445195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 328 - 588
Target Start/End: Original strand, 15498040 - 15498307
Alignment:
Q  328 gaatctcacgattttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttc-------caaa 420  Q
    ||||| ||| |||||||||||    |||||||||||| |||||| || ||||||| || |||||| |||||||||||||||| ||||||       ||||    
T  15498040 gaatcccacaattttcacctctcataccctagttgttctcaaacatgcgaggttacaacttgaagctgaaaatttgtgtgttcatcttccatctctcaaa 15498139  T
Q  421 tctcaaaaccctacatctaagatatgtttgttttgaaactcggaataatttcatgaaacttcttaaagcttgtcctattctacaaaatttgcatgcttct 520  Q
      ||||||||||| || | | || |||  |||||||||  |  ||| || |||||||||||||||| |||||||||| ||||||| ||||||||  ||||    
T  15498140 agtcaaaaccctatatttgaaatttgtccgttttgaaaagcataatgatgtcatgaaacttcttaatgcttgtcctaatctacaagatttgcatatttct 15498239  T
Q  521 tttctgatatataggagacatgatgaaaataataaagtagaagaattcaaacccttgttcttgtccaa 588  Q
      ||  ||||||| ||||| | | || |||| | | | |||||| || ||| ||||||||||||||||    
T  15498240 catcctatatatatgagacgtaacgagaatagtgaggcagaagagtttaaatccttgttcttgtccaa 15498307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 49178500 - 49178562
Alignment:
Q  11 ctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaagatgggcccca 73  Q
    ||||||||||| ||||| ||||| ||||||||||| ||| ||||||||||||||||| |||||    
T  49178500 ctctcttttctcccaacaaaactcgctttcaccaccaccgttctctccaaaagatggacccca 49178562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 49171596 - 49171547
Alignment:
Q  14 tcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaag 63  Q
    |||||||||||||||||| | ||||||||||| ||| |||||||||||||    
T  49171596 tcttttcttccaaccaaattcgctttcaccaccaccgttctctccaaaag 49171547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 418
Target Start/End: Complemental strand, 37997343 - 37997263
Alignment:
Q  338 attttcacctccagaaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttcca 418  Q
    ||||||| ||||  |||||| |||||| |||||||| | |||||||| |||| |  ||| | |||||||||||||||||||    
T  37997343 attttcatctcccaaacccttgttgttctcaaacttaaaaggttaaatgttggaaatgatactttgtgtgttgatcttcca 37997263  T

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Target: scaffold1089 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 435
Target Start/End: Complemental strand, 1322 - 1239
Alignment:
Q  352 aaccctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctaca 435  Q
    ||||||||||||| ||||||||||  ||||| ||||||||| |||||||||||||  |||||||||    ||||||||||||||    
T  1322 aaccctagttgttctcaaacttgaatggttacaagttgaagttgaaaatttgtgtcgtgatcttccgtccctcaaaaccctaca 1239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 7871252 - 7871305
Alignment:
Q  8 attctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaa 61  Q
    ||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||    
T  7871252 attctctctttcctcccaaccaaactcgctttcactacaacccttctttccaaa 7871305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 23951639 - 23951697
Alignment:
Q  8 attctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaagatg 66  Q
    |||||||||||||| |||||||||||||||||| ||  | |  ||||||||||||||||    
T  23951639 attctctcttttctcccaaccaaacttgctttctccgtagctattctctccaaaagatg 23951697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 23951054 - 23950997
Alignment:
Q  11 ctctcttttcttccaaccaaacttgctttcaccacaacccttctctccaaaagatggg 68  Q
    ||||| ||||| | ||| |||||||||||| |||||||  ||||||||||||||||||    
T  23951054 ctctcctttctccaaacaaaacttgctttctccacaactattctctccaaaagatggg 23950997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 356 - 453
Target Start/End: Complemental strand, 51016916 - 51016819
Alignment:
Q  356 ctagttgttgtcaaacttgagaggttaaaagttgaaggtgaaaatttgtgtgttgatcttccaaatctcaaaaccctacatctaagatatgtttgttt 453  Q
    ||||||||| | ||||||||||| |||||| ||||| |||| || |||||| |||||||||||    |||||||||||||| | | ||||||| ||||    
T  51016916 ctagttgttataaaacttgagagattaaaaattgaaagtgataagttgtgtattgatcttccatcgttcaaaaccctacatttgaaatatgttggttt 51016819  T

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