View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4462-Insertion-3 (Length: 575)
Name: NF4462-Insertion-3
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4462-Insertion-3 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Complemental strand, 38965768 - 38965201
Alignment:
| Q |
8 |
gtacacacaaatgtttatggcaggctggagttgtgcatttcttctttccaccacacaaacaatatgcatttaattgtcatcagatttttagttgctcaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38965768 |
gtacacacaaatgtttatggcaggctggagttgtgcatttcttctttccaccacacaaacaatatgcatttaattgtcatcagatttttagttgctcaat |
38965669 |
T |
|
| Q |
108 |
gtaatccaaatcatgagccatatgctcaatgaaaatgtaatcattggtgtggcgtgctccttgaaaaaattagtacatctacttcatatatgaattgcag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38965668 |
gtaatccaaatcatgagccatatgctcaatgaaaatgtaatcattggtgtggcgtgctccttgaaaaaattagtacatctacttcatatatgaattgcag |
38965569 |
T |
|
| Q |
208 |
agatcaaagtaatattgctcatcacttaccctgcaatttagacatgcgtatatggccatcaaagttagtcttttaacagtcatgttatatgttcatacaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38965568 |
agatcaaagtaatattgctcatcacttaccctgcaatttagacatgcgtatatggccatcaaagttagtcttttaacagtcatgttatatgttcatacaa |
38965469 |
T |
|
| Q |
308 |
tataattcataccttatttttctttgttactcttttatggttcatccaagcacaattttttgttggaaaatctttcaagataactcaaattttagagatt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38965468 |
tataattcataccttatttttctttgttactcttttatggttcatccaagcacaattttttgttggaaaatctttcaagataactcaaattttagagatt |
38965369 |
T |
|
| Q |
408 |
gttggcggaaggattgattttcaattgaaggttaatgtgattagtcctgactgtcccaacccaacacaggaaggaagtcttcgaatgatattgtttgatg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38965368 |
gttggcggaaggattgattttcaattgaaggttaatgtgattagtcctgactgtcccaacccaacacaggaaggaagtcttcgaatgatattgtttgatg |
38965269 |
T |
|
| Q |
508 |
aaaaggtatgattgaaagccctatcatagatttttgttggtccatatgataaatgataccctgctgta |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38965268 |
aaaaggtatgattgaaagccctatcatagatttttgttggtccatatgataaatgataccctgctgta |
38965201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University