View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4462-Insertion-4 (Length: 443)

Name: NF4462-Insertion-4
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4462-Insertion-4
NF4462-Insertion-4
[»] chr1 (1 HSPs)
chr1 (8-424)||(4238452-4238872)
[»] chr3 (2 HSPs)
chr3 (306-427)||(19920922-19921039)
chr3 (160-283)||(19915996-19916113)


Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 8 - 424
Target Start/End: Original strand, 4238452 - 4238872
Alignment:
Q  8 cagaagtcgtgccgccgtagctgcttcatcataatcataatctaatgcaaaagattcaagtttcttcacatcttgagatgatgagccagcagaagtagtt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4238452 cagaagtcgtgccgccgtagctgcttcatcataatcataatctaatgcaaaagattcaagtttcttcacatcttgagatgatgagccagcagaagtagtt 4238551  T
Q  108 gaagttgaagaggtactagtagaagccttgttcttagtcttgaattgtgtaggcttttttatcttaagcactttagttttaggagatgtagccaaaccat 207  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4238552 gaagttgaagaggtacttgtagaagccttgttcttagtcttgaattgtgtaggcttttttatcttaagcactttagttttaggagatgtagccaaaccat 4238651  T
Q  208 ttgcagcttctgccatggcccttcttgcctttctctgcctgattccacaagcattgcaaagtgactgcaccaacatgttttcatgt----taactatata 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||    
T  4238652 ttgcagcttctgccatggcccttcttgcctttctctgcctgattccacaagcattgcaaagtgactgcaccaacatgttttcatgttaactaactatata 4238751  T
Q  304 tgtaaccagatataattcaaatatcaatcaaattaagtttaagtacagaataatacttgcatgacaatagtatgatctattgaatattcaactaattaaa 403  Q
    |||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  4238752 tgtaaccagacataattgaaatatcaatcaaattaagtttaagtacggaataatacttgcatgactctagtatgatctattgaatattcaactaattaaa 4238851  T
Q  404 accgtgatataataataaaaa 424  Q
    ||||||||||||||| |||||    
T  4238852 accgtgatataataaaaaaaa 4238872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 306 - 427
Target Start/End: Original strand, 19920922 - 19921039
Alignment:
Q  306 taaccagatataattcaaatatcaatcaaattaagtttaagtacagaataatacttgcatgacaatagtatgatctattgaatattcaactaattaaaac 405  Q
    |||| ||||||||||||||||   ||||||||||||||||| |  ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  19920922 taactagatataattcaaata---atcaaattaagtttaag-atggaataatacttgcatgactctagtgtgatctattgaatattcaactaattaaaac 19921017  T
Q  406 cgtgatataataataaaaatta 427  Q
    |||||||||||| |||||||||    
T  19921018 cgtgatataatattaaaaatta 19921039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 19915996 - 19916113
Alignment:
Q  160 gcttttttatcttaagcactttagttttaggagatgtagccaaaccatttgcagcttctgccatggcccttcttgcctttctctgcctgattccacaagc 259  Q
    |||| ||||||||||||||||| |||||||  ||||||||||| ||||| |||||      |||||||| |||||||||||||||||||||||||||| |    
T  19915996 gcttatttatcttaagcactttggttttagtggatgtagccaatccattggcagc------catggcccgtcttgcctttctctgcctgattccacaacc 19916089  T
Q  260 attgcaaagtgactgcaccaacat 283  Q
    ||||||||||||| ||||||||||    
T  19916090 attgcaaagtgacggcaccaacat 19916113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University