View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4462_high_3 (Length: 409)
Name: NF4462_high_3
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4462_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 19117675 - 19117470
Alignment:
| Q |
10 |
agaagaagctaacttgtcaacctatcttgttagtaaagaagaagaggtaaatatatgtggcaccagaaacttggtcatttaaacctgagaggtatgaaga |
109 |
Q |
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| T |
19117675 |
agaagaagctaacttgtcaacctatcttattagtaaagaagaagaggtaaatat--gtggcaccagaaacttggtcatttaaatctgagaggtataaaga |
19117578 |
T |
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| Q |
110 |
aagccatatatgtagaagcaattagagggttacctaaactaaaagttgttaaggacaacaattatggtgaatgtcaaattggtaagcaaactcgaatgtc |
209 |
Q |
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| T |
19117577 |
aagccatatatgtagaagcaattagagggttacctaaactaaaaattgttaatgacaacatttgtggtgaatgtcaaattggtaagcaaactcaaatgtc |
19117478 |
T |
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| Q |
210 |
acatccga |
217 |
Q |
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|||||||| |
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| T |
19117477 |
acatccga |
19117470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 312 - 395
Target Start/End: Complemental strand, 19114363 - 19114278
Alignment:
| Q |
312 |
agaagaccaaagagaagggggc--agcgctgtccgatgatccgaatagtgctgatctaaaagaggcgtacaaagaagtggtttatg |
395 |
Q |
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||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
19114363 |
agaagaccaaagagaagggggggaagcgttgtccgatgatccaaatagtgatgatctaaaagaggcttacaaagaagtggtttatg |
19114278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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