View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4462_high_6 (Length: 364)
Name: NF4462_high_6
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4462_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 49423713 - 49424048
Alignment:
| Q |
11 |
atgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttatccctaatgtcttgaaagttgaatctatcaaccat |
110 |
Q |
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| T |
49423713 |
atgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttatccctaatgtcttgaaagttgaatctatcaaccat |
49423812 |
T |
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| Q |
111 |
ctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaatggcttgttaagacagttcaaaagcttgattctc |
210 |
Q |
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| T |
49423813 |
ctccaactttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaatggcttgttaagacagttcaaaagcttgattctc |
49423912 |
T |
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| Q |
211 |
atttccattattttttgaatttattagacctataagacgtgagtttctcggttctccacaggcatactaagtattcaaggagcagttgatacaaacctgt |
310 |
Q |
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| T |
49423913 |
a-ttccattattttttgaatttattagacctataagacgtgagtttctcggttctccacaggcatactaagtattcaaggagcagttgatacaaacctgt |
49424011 |
T |
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| Q |
311 |
cattagtaatctggataatcactccattcatgaaacc |
347 |
Q |
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| T |
49424012 |
cattagtaatctggataatcgctccattcatgaaacc |
49424048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 49425870 - 49426060
Alignment:
| Q |
11 |
atgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttatccctaatgtcttgaaagttgaatctatcaaccat |
110 |
Q |
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| T |
49425870 |
atgaagttgtaacatgacattgccaatatgaattggc-gaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccat |
49425968 |
T |
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| Q |
111 |
ctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaatggcttgttaagacagttcaaaagct |
202 |
Q |
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| T |
49425969 |
ctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttcaaaagct |
49426060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 66 - 213
Target Start/End: Complemental strand, 43363293 - 43363148
Alignment:
| Q |
66 |
aaaaatgttatccctaatgtcttgaaagttgaatctatcaaccatctccatctttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaa |
165 |
Q |
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| T |
43363293 |
aaaaatgttatcccttatgtcttgaaagttgaatctattaatcatctcctacat--agtttaaactggttgttgaacaattgaagtgaaacactaaacaa |
43363196 |
T |
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| Q |
166 |
gcttccccaaatggcttgttaagacagttcaaaagcttgattctcatt |
213 |
Q |
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| T |
43363195 |
gcttccccaaatgactcattaagacaattcaaaaacttccttctcatt |
43363148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 49416656 - 49416601
Alignment:
| Q |
292 |
gcagttgatacaaacctgtcattagtaatctggataatcactccattcatgaaacc |
347 |
Q |
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| T |
49416656 |
gcagttgatacaaacgtatcaatggtaatctggataatcactccgttcatgaaacc |
49416601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 17640992 - 17641030
Alignment:
| Q |
72 |
gttatccctaatgtcttgaaagttgaatctatcaaccat |
110 |
Q |
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| T |
17640992 |
gttatccctaaattcttgaaagttgaatctatcaaccat |
17641030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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