View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4462_low_1 (Length: 541)
Name: NF4462_low_1
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4462_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 13 - 524
Target Start/End: Complemental strand, 592504 - 591993
Alignment:
| Q |
13 |
gacatcatcatggtataataatggtatcaaacttctgagacttgattgttggttactttatgttgataattgtaaattcctctcttgcaacnnnnnnngg |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | || |
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| T |
592504 |
gacatgatcatggtataataatggtatcaaacttctgagacttgattgtttgttactttatgttgataattgtaaattcctctcttgcagctttctttgg |
592405 |
T |
|
| Q |
113 |
ctgtgttgttttctgaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctga |
212 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592404 |
ctgtgttgttttctcaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctga |
592305 |
T |
|
| Q |
213 |
tcatcttgacaaccagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataacggaatgct |
312 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
592304 |
tcatcttgacagccagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataatggaatgct |
592205 |
T |
|
| Q |
313 |
tccaatcagtgttctcttcccatgcctgccaattccggctcacaggcgccgtgacaacgcacgtaaaaagcttgctgaaatatttgcaaacatcatattt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
592204 |
tccaatcagtgttctcttcccatgcctgccaattccggctcacaggcgccgtgacaacgcacgtaaaaagcttgctgaaatatttgcaaacatcatatct |
592105 |
T |
|
| Q |
413 |
tcacgaaaaagtgccgacaaatcagaggaagacatgctgcagtgcttcattgactcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacag |
512 |
Q |
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| T |
592104 |
tcacgaaaaagtgccgacaaatcagagaacgacatgctgcagtgcttcattgactcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacag |
592005 |
T |
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| Q |
513 |
gactcctcattg |
524 |
Q |
| |
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|||||||||||| |
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| T |
592004 |
gactcctcattg |
591993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 21 - 524
Target Start/End: Original strand, 579932 - 580434
Alignment:
| Q |
21 |
catggtataataatggtatcaaacttctgagacttgattgttggttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttg |
120 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
579932 |
catggtataataatggtatcaaacctctgagacttgattgtttgtttctttatgttgataattgtaaattcctctcttgcaactttctttcactgtgtta |
580031 |
T |
|
| Q |
121 |
ttttctgaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttg |
220 |
Q |
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| T |
580032 |
ttt-ctcaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttg |
580130 |
T |
|
| Q |
221 |
acaaccagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatca |
320 |
Q |
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||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580131 |
acagccagtagatgtctcttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatca |
580230 |
T |
|
| Q |
321 |
gtgttctcttcccatgcctgccaattccggctcacaggcgccgtgacaacgcacgtaaaaagcttgctgaaatatttgcaaacatcatattttcacgaaa |
420 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
580231 |
gtgttctcttcccatacctgccaattccggctcacaggcgccgtgacaacgcacgtaaaaagcttgctgaaatatttgcaaacatcatatcttcacgaaa |
580330 |
T |
|
| Q |
421 |
aagtgccgacaaatcagaggaagacatgctgcagtgcttcattgactcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacaggactcctc |
520 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580331 |
aattgccgacaaatcagaggacgacatgctgcagtgcttcattgactcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacaggactcctc |
580430 |
T |
|
| Q |
521 |
attg |
524 |
Q |
| |
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|||| |
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| T |
580431 |
attg |
580434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 453 - 524
Target Start/End: Original strand, 37434150 - 37434221
Alignment:
| Q |
453 |
agtgcttcattgactcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacaggactcctcattg |
524 |
Q |
| |
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||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||||| |
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| T |
37434150 |
agtgcttcattgactcaaaatacaaagacaaccgccttacaaccgaagctgaagtcacaggactcctcattg |
37434221 |
T |
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