View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4462_low_11 (Length: 326)
Name: NF4462_low_11
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4462_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 30774511 - 30774212
Alignment:
| Q |
8 |
gagaagaaattataaaaatgattcaagaagctagagagtactgggctgaagatatgatattcttaaggaagtctatggtaatgaatgcattagatggctg |
107 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| | ||||||||| || |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
30774511 |
gagaagaaattaacaaaatgattcaagaagctagagagtaccgtgctgaagatgagaaattcctaaggaagtctatggtaatgaatgcattagattgctg |
30774412 |
T |
|
| Q |
108 |
catttacaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcaatgatgcaattgcagtggctaca |
207 |
Q |
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| T |
30774411 |
catttacaagttgaggaatggtctaaagattaaggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcactgatgcaattgcagtggctaca |
30774312 |
T |
|
| Q |
208 |
aatttgcttgataagaataatcagcggaatgaaagtaatgttctcgaagatcatatgaagaagcttgaaaatatgttggaagaccttgaagtaaagactg |
307 |
Q |
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| T |
30774311 |
aatttgcttgataagaataatcagcggaatgaaattcatgttctcgaagatcatatgaagaagcttgaaaatatgttgaaagaccttgaagtaaagactg |
30774212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 8615969 - 8615687
Alignment:
| Q |
13 |
gaaattataaaaatgattcaagaagctagag-agtactgggctgaagatatgatattcttaaggaagtctatggtaatgaatgcattagatggctgcatt |
111 |
Q |
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| T |
8615969 |
gaaattaaaaaactgattcaagaagc-agaggagtaccgcgctgaagatgaaaaattcctaaggaaggccaaggtaatgaatgaattagatgactgcatt |
8615871 |
T |
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| Q |
112 |
tacaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcaatgatgcaattgcagtggctacaaatt |
211 |
Q |
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| T |
8615870 |
tacaagttgaggaatgctctaaagaataaggatgttgctttaaagctatcatctcaaaaagttgaaaatatcaacaatgcaattactgtggctacaaatt |
8615771 |
T |
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| Q |
212 |
tgcttgataagaataatcagcggaatgaaagta-atgttctcgaagatcatatgaagaagcttgaaaatatgttggaagaccttg |
295 |
Q |
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| T |
8615770 |
tgcttgataggaataaccagcagagtg-aagtagaagttctcgaagatcatctgaaggagctcaaaagtatgttggaagaccttg |
8615687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 294
Target Start/End: Original strand, 8586673 - 8586901
Alignment:
| Q |
66 |
attcttaaggaagtctatggtaatgaatgcattagatggctgcatttacaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatct |
165 |
Q |
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|||| |||||||| ||| |||||||||| ||||||||| || |||||| ||| |||||||||||||||| || ||| | || ||||| || ||| |
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| T |
8586673 |
attcctaaggaaggctaaggtaatgaattcattagatgattgtgtttacaagttaaggaatgctctaaagaataaggatattaaactaaagtgctcttct |
8586772 |
T |
|
| Q |
166 |
caaaaactcaaaaagatcaatgatgcaattgcagtggctacaaatttgcttgataagaataatcagcggaatgaaagtaatgttctcgaagatcatatga |
265 |
Q |
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| T |
8586773 |
caaaaagttaaaaagatcaatcatgcaattacaatggctacaaatttgcttgataagaataaccaggagaatgacatagatgttcttgtggatcatctga |
8586872 |
T |
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| Q |
266 |
agaagcttgaaaatatgttggaagacctt |
294 |
Q |
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| T |
8586873 |
aggagcttgagagcatgttggaagacctt |
8586901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 16662917 - 16663204
Alignment:
| Q |
21 |
aaaaatgattcaagaagctagagagtactgggctgaagatatgatattcttaaggaagtctatggtaatgaatgcattagatggctgcatttacaggttg |
120 |
Q |
| |
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|||| ||||||||||||||| |||||| ||||||||| || |||| |||||||| | | |||||||||||||||||||| ||||||||||| ||| |
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| T |
16662917 |
aaaattgattcaagaagctaaggagtaccatgctgaagatgagaaattcctaaggaaggccaaggtaatgaatgcattagatgactgcatttacaaattg |
16663016 |
T |
|
| Q |
121 |
aggaatgctctaaagattatggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcaatgatgcaattgcagtggctacaaatttgcttgata |
220 |
Q |
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|||||||||||||||| || | | || || |||||||| || | |||||| |||||||||||| |||||||| | ||||||| | |||||||| || |
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| T |
16663017 |
aggaatgctctaaagaataagaatgtcaaattaaagctttctttccaaaaaaataaaaagatcaatcatgcaattacggtggctaaagatttgcttcatg |
16663116 |
T |
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| Q |
221 |
agaataatcagcggaatgaaagta-atgttctcgaagatcatatgaagaagcttgaaaatatgttggaagaccttgaagtaaagactgt |
308 |
Q |
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| T |
16663117 |
agaagaaccaggggaatg-aagtagatgttcttgaggatcatctgaaggagcttgagagtatgttggatcaccttgtaatcaagactgt |
16663204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 15594292 - 15594081
Alignment:
| Q |
13 |
gaaattataaaaatgattcaagaagctagagagtactgggctgaagatatgatattcttaaggaagtctatggtaatgaatgcattagatggctgcattt |
112 |
Q |
| |
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||||||| |||||||||||||||||| || || | ||||||||| || |||| |||||||| | |||||||||||||||||||| ||| ||| |
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| T |
15594292 |
gaaattaaaaaaatgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaaggaaggcggaggtaatgaatgcattagatgactgtgttt |
15594193 |
T |
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| Q |
113 |
acaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatctcaaaaactcaaaaagatcaatgatgcaattgcagtggctacaaattt |
212 |
Q |
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||| |||||| |||||||| |||| || ||| || || ||||| || || ||| || || | | ||||||||||| ||||||| |||||||||||||||| |
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| T |
15594192 |
acaagttgagaaatgctctgaagaataaggatgtcaaattaaaactctcttctaaagaagttacaaagatcaatggtgcaattacagtggctacaaattt |
15594093 |
T |
|
| Q |
213 |
gcttgataagaa |
224 |
Q |
| |
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|||||||||||| |
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| T |
15594092 |
gcttgataagaa |
15594081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 227
Target Start/End: Original strand, 4679628 - 4679679
Alignment:
| Q |
176 |
aaaagatcaatgatgcaattgcagtggctacaaatttgcttgataagaataa |
227 |
Q |
| |
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|||||||||| ||||||||| ||||||| || || ||||||||||||||||| |
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|
| T |
4679628 |
aaaagatcaacgatgcaattacagtggccaccaacttgcttgataagaataa |
4679679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 28219097 - 28219049
Alignment:
| Q |
88 |
atgaatgcattagatggctgcatttacaggttgaggaatgctctaaaga |
136 |
Q |
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|||||||||||||||| |||| |||||| |||||||||||||||||||| |
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| T |
28219097 |
atgaatgcattagatgactgcgtttacaagttgaggaatgctctaaaga |
28219049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 43743998 - 43743915
Alignment:
| Q |
85 |
gtaatgaatgcattagatggctgcatttacaggttgaggaatgctctaaagattatggacgtaaatttaaagctatcatctcaa |
168 |
Q |
| |
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||||||||||||||||||| || |||||| ||||||||||||| |||||| || ||| || || |||||||| || |||||| |
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| T |
43743998 |
gtaatgaatgcattagatgaatgggtttacaagttgaggaatgctgtaaagaataaggatgttaaattaaagctttcttctcaa |
43743915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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