View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4462_low_13 (Length: 269)

Name: NF4462_low_13
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4462_low_13
NF4462_low_13
[»] scaffold0091 (3 HSPs)
scaffold0091 (147-258)||(29057-29169)
scaffold0091 (9-84)||(28917-28994)
scaffold0091 (9-71)||(24720-24782)
[»] scaffold0218 (2 HSPs)
scaffold0218 (148-258)||(14378-14489)
scaffold0218 (9-79)||(14237-14307)
[»] chr3 (10 HSPs)
chr3 (150-258)||(16642300-16642409)
chr3 (149-258)||(4712803-4712913)
chr3 (147-258)||(14062781-14062893)
chr3 (147-258)||(14055040-14055152)
chr3 (151-250)||(13926860-13926960)
chr3 (9-71)||(16642133-16642195)
chr3 (9-71)||(4712997-4713059)
chr3 (9-71)||(14055222-14055284)
chr3 (9-71)||(14062983-14063045)
chr3 (12-50)||(14481800-14481838)
[»] chr6 (4 HSPs)
chr6 (147-247)||(14989390-14989490)
chr6 (149-258)||(14980266-14980376)
chr6 (9-71)||(14980460-14980522)
chr6 (147-184)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (147-258)||(51658665-51658777)
chr1 (147-250)||(13882248-13882351)
chr1 (9-71)||(13882464-13882526)
chr1 (12-70)||(51658854-51658912)
chr1 (162-230)||(1567097-1567166)
[»] chr7 (11 HSPs)
chr7 (147-258)||(48376787-48376899)
chr7 (147-258)||(16060512-16060624)
chr7 (9-84)||(16060374-16060449)
chr7 (147-250)||(4531761-4531865)
chr7 (9-71)||(9080206-9080268)
chr7 (9-66)||(16069010-16069067)
chr7 (9-64)||(48376637-48376692)
chr7 (147-184)||(9080338-9080375)
chr7 (162-208)||(37945878-37945924)
chr7 (25-66)||(41744134-41744175)
chr7 (147-179)||(37946032-37946064)
[»] scaffold0003 (2 HSPs)
scaffold0003 (147-222)||(130795-130870)
scaffold0003 (9-71)||(130633-130695)
[»] chr8 (7 HSPs)
chr8 (147-258)||(23658526-23658646)
chr8 (147-210)||(23657751-23657814)
chr8 (9-68)||(23657648-23657707)
chr8 (9-68)||(23658423-23658482)
chr8 (202-258)||(23657824-23657881)
chr8 (9-66)||(17862246-17862303)
chr8 (217-250)||(29293929-29293962)
[»] scaffold1269 (1 HSPs)
scaffold1269 (170-258)||(1-90)
[»] scaffold0063 (2 HSPs)
scaffold0063 (9-84)||(28443-28518)
scaffold0063 (147-185)||(28342-28380)
[»] chr2 (3 HSPs)
chr2 (147-250)||(23656472-23656576)
chr2 (10-66)||(23907788-23907844)
chr2 (167-250)||(44586472-44586556)
[»] scaffold0061 (1 HSPs)
scaffold0061 (14-71)||(18099-18156)
[»] scaffold0319 (1 HSPs)
scaffold0319 (193-258)||(13573-13639)
[»] scaffold1043 (1 HSPs)
scaffold1043 (9-66)||(1427-1484)
[»] chr5 (3 HSPs)
chr5 (9-66)||(25756783-25756840)
chr5 (9-66)||(25790961-25791018)
chr5 (12-56)||(24832209-24832253)
[»] chr4 (3 HSPs)
chr4 (9-66)||(19728447-19728504)
chr4 (168-238)||(3576240-3576311)
chr4 (198-250)||(18231489-18231542)
[»] scaffold0170 (1 HSPs)
scaffold0170 (10-66)||(17250-17306)


Alignment Details
Target: scaffold0091 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 29057 - 29169
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 29156  T
Q  247 cctc-ttattcat 258  Q
    |||| ||||||||    
T  29157 cctcattattcat 29169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 28917 - 28994
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 84  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  28917 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatatttacacaccaccc 28994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 24720 - 24782
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24720 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 24782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 14378 - 14489
Alignment:
Q  148 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggattc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 14477  T
Q  248 ctc-ttattcat 258  Q
    ||| ||||||||    
T  14478 ctcattattcat 14489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 14237 - 14307
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacac 79  Q
    |||| ||||||  |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  14237 gacaccatcatataagtcatcatcataattatacgtcatcattgtcatagtcaatatatatatatacacac 14307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 16642300 - 16642409
Alignment:
Q  150 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggattcct 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattcct 16642399  T
Q  250 c-ttattcat 258  Q
    | ||||||||    
T  16642400 cattattcat 16642409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 4712913 - 4712803
Alignment:
Q  149 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggattcc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 4712814  T
Q  249 tc-ttattcat 258  Q
    || ||||||||    
T  4712813 tcattattcat 4712803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 14062893 - 14062781
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 246  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaat 14062794  T
Q  247 cctc-ttattcat 258  Q
    |||| ||||||||    
T  14062793 cctcattattcat 14062781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 14055152 - 14055040
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 246  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| || |    
T  14055152 ctcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcgcattatagaat 14055053  T
Q  247 cctc-ttattcat 258  Q
    |||| ||||||||    
T  14055052 cctcattattcat 14055040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 250
Target Start/End: Complemental strand, 13926960 - 13926860
Alignment:
Q  151 tcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgttacattatggattcct 249  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||  | ||||||||||||| | |||||||||||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatcaattgtcatcactcttcatcacattatggattcct 13926861  T
Q  250 c 250  Q
    |    
T  13926860 c 13926860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 16642133 - 16642195
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642133 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 16642195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 4713059 - 4712997
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4713059 gacaccatcattcaagttatcatcataattatacgtcgtcattctcatagtcaatatatatat 4712997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 14055284 - 14055222
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  14055284 gacatcatcattcaagtcatcatcataattatacgtcatcattatcatcgtcaatatatatat 14055222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 14063045 - 14062983
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  14063045 gacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 14062983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 14481838 - 14481800
Alignment:
Q  12 atcatcattcaagtcatcatcataattatacgtcgtcat 50  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  14481838 atcatcattcaaatcatcatcataattatacatcgtcat 14481800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 14989490 - 14989390
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 14989391  T
Q  247 c 247  Q
    |    
T  14989390 c 14989390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 14980376 - 14980266
Alignment:
Q  149 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggattcc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattcc 14980277  T
Q  249 tc-ttattcat 258  Q
    || ||||||||    
T  14980276 tcattattcat 14980266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 14980522 - 14980460
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14980522 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 14980460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcat 184  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 51658777 - 51658665
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 246  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 51658678  T
Q  247 cctc-ttattcat 258  Q
    |||| ||||||||    
T  51658677 cctcattattcat 51658665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 13882351 - 13882248
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacaatatggatt 13882252  T
Q  247 cctc 250  Q
    ||||    
T  13882251 cctc 13882248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 13882526 - 13882464
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13882526 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcattgtctatatatatat 13882464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 51658912 - 51658854
Alignment:
Q  12 atcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatata 70  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  51658912 atcatcgttcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatata 51658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 1567166 - 1567097
Alignment:
Q  162 atataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactctt 230  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||||||||||||  ||||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctt 1567097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 48376787 - 48376899
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 246  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatagatt 48376886  T
Q  247 cctc-ttattcat 258  Q
    |||| ||||||||    
T  48376887 cctcattattcat 48376899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 16060512 - 16060624
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggatt 246  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | ||||||| ||||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatcactcctcatcacattatagatt 16060611  T
Q  247 cctc-ttattcat 258  Q
    |||| ||||||||    
T  16060612 cctcattattcat 16060624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 16060374 - 16060449
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 84  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16060374 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 16060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 4531865 - 4531761
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgttacattatggat 245  Q
    |||||||||| ||| |||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||  | ||||||||||||||| |||||||||||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatcaattgtcatcactcttcgtcacattatggat 4531766  T
Q  246 tcctc 250  Q
    |||||    
T  4531765 tcctc 4531761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 9080206 - 9080268
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  9080206 gacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 9080268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 16069067 - 16069010
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  16069067 gacatcatcattcaaatcatcatcataattatacgtcatcattctcatcgtcaatata 16069010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 48376637 - 48376692
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaata 64  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  48376637 gacaccatcatttaagtcatcatcataattatacgtcatcattctcatagtcaata 48376692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcat 184  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 37945924 - 37945878
Alignment:
Q  162 atataaacattatcatttctcatcgtatttatttaattacatatata 208  Q
    ||||||||||  |||||||| |||||||||||||| |||||||||||    
T  37945924 atataaacatcgtcatttcttatcgtatttatttatttacatatata 37945878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 41744134 - 41744175
Alignment:
Q  25 tcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  41744134 tcatcatcataattagacgtcgtcattctcatcatcaatata 41744175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 37946064 - 37946032
Alignment:
Q  147 ctcatcatcactaacatataaacattatcattt 179  Q
    |||||||||||||| ||||||||||||||||||    
T  37946064 ctcatcatcactaaaatataaacattatcattt 37946032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 130633 - 130695
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130633 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 130695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 23658526 - 23658646
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattac--------atatatataatatcttcgtcatcactcttcgttacat 238  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| ||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatcactcttcgtcacat 23658625  T
Q  239 tatggattcctc-ttattcat 258  Q
    |||||||||||| ||||||||    
T  23658626 tatggattcctcattattcat 23658646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 23657751 - 23657814
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 210  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatata 23657814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 23657648 - 23657707
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatata 68  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23657648 gacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtctatatata 23657707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 23658423 - 23658482
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatata 68  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  23658423 gacaccatcattcaagtcatcatcataattataagtcgtcattctcatagtctatatata 23658482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 23657824 - 23657881
Alignment:
Q  202 atatatataatatcttcgtcatcactcttcgttacattatggattcctc-ttattcat 258  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  23657824 atatatataatatcttcgtcatcactcttcgtcacattatggattcctcattattcat 23657881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 17862303 - 17862246
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||||||| |||||||||||||||||| |  |||||||||| |||||||||    
T  17862303 gacatcatcattcaaatcatcatcataattataccttatcattctcatcgtcaatata 17862246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 29293929 - 29293962
Alignment:
Q  217 tcgtcatcactcttcgttacattatggattcctc 250  Q
    ||||||||||||||||| ||||||||||||||||    
T  29293929 tcgtcatcactcttcgtcacattatggattcctc 29293962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 1 - 90
Alignment:
Q  170 attatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgttacattatggattcctc-ttattcat 258  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatggaatcctcattattcat 90  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 28518 - 28443
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 84  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28518 gacaccatcattcaattcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 28443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatc 185  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 23656576 - 23656472
Alignment:
Q  147 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgttacattatggat 245  Q
    ||||| |||| ||| ||||||| ||||||||||||||| ||||||||||| || |||||||||||||||  ||||||||||||||||| |||||||||||    
T  23656576 ctcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatataatatcaatcgtcatcactcttcgtcacattatggat 23656477  T
Q  246 tcctc 250  Q
    |||||    
T  23656476 tcctc 23656472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 23907788 - 23907844
Alignment:
Q  10 acatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    |||||||||||||| | |||||||||| |||||||| |||||||||| |||||||||    
T  23907788 acatcatcattcaaattatcatcataaatatacgtcatcattctcatcgtcaatata 23907844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 44586556 - 44586472
Alignment:
Q  167 aacattatcatttctcatcgtatttatttaattacatatatataata-tcttcgtcatcactcttcgttacattatggattcctc 250  Q
    ||||| ||||||||  |||||| | ||||  |||||||||||||||| |  |||||||||||||| |||||| ||||||||||||    
T  44586556 aacatcatcatttcatatcgtagtaatttctttacatatatataatactaatcgtcatcactctttgttacagtatggattcctc 44586472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 18156 - 18099
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  18156 catcattcaagtcatcatcataatcatacttcgtcattctcatagtcaatatatatat 18099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 13639 - 13573
Alignment:
Q  193 tttaattacatatatataatatcttcgtcatcactcttcgttacattatggattcctc-ttattcat 258  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| ||||||||    
T  13639 tttaattacatatatataatatcttcgtcatcactctttgtcacatcatggattcctcattattcat 13573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 1484 - 1427
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||| |||||||||    
T  1484 gacatcatcattcaaatcatcatcataattatacgttatcattctcatcgtcaatata 1427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 25756840 - 25756783
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||    
T  25756840 gacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25756783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 25790961 - 25791018
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||    
T  25790961 gacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25791018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 24832253 - 24832209
Alignment:
Q  12 atcatcattcaagtcatcatcataattatacgtcgtcattctcat 56  Q
    |||||||||||| |||||||||||||||||| || ||||||||||    
T  24832253 atcatcattcaaatcatcatcataattatacatcatcattctcat 24832209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 19728504 - 19728447
Alignment:
Q  9 gacatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||||||| |||||||||||||||||| |  |||||||||| || ||||||    
T  19728504 gacatcatcattcaaatcatcatcataattatactttatcattctcatcgttaatata 19728447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 3576311 - 3576240
Alignment:
Q  168 acattatcatttctcatcgtatttatttaattacatatatataatatc-ttcgtcatcactcttcgttacat 238  Q
    |||| ||||| ||||||||||||||||||  ||||| ||||||| |||  ||||||||||||||||| ||||    
T  3576311 acatcatcatctctcatcgtatttatttatatacatttatataaaatcaatcgtcatcactcttcgtcacat 3576240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 18231542 - 18231489
Alignment:
Q  198 ttacatatatataatatct-tcgtcatcactcttcgttacattatggattcctc 250  Q
    |||||||||||||||||   |||||||||||||| |||||| ||||||||||||    
T  18231542 ttacatatatataatattaatcgtcatcactctttgttacagtatggattcctc 18231489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 17250 - 17306
Alignment:
Q  10 acatcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    |||||||||||||| | |||||||||| |||||| | |||||||||| |||||||||    
T  17250 acatcatcattcaaattatcatcataaatatacgccatcattctcatcgtcaatata 17306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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