View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4462_low_15 (Length: 250)
Name: NF4462_low_15
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4462_low_15 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 3299775 - 3300011
Alignment:
| Q |
15 |
gaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagt |
114 |
Q |
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| T |
3299775 |
gaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacggtgcagacttgacacttaatccgaaaaacaagt |
3299874 |
T |
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| Q |
115 |
taacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttggatagatcttcctgcacggttcacttctt |
214 |
Q |
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| T |
3299875 |
taacaagacgaaaaataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttccttggatagatcttcctgcacggttcacttctt |
3299974 |
T |
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| Q |
215 |
cttcaatgctgactttg-ttttattaagtcctccgct |
250 |
Q |
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| T |
3299975 |
cttcaatgctgactttgtttttattaagtcctccgct |
3300011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 247
Target Start/End: Complemental strand, 43067938 - 43067717
Alignment:
| Q |
29 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
128 |
Q |
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| T |
43067938 |
ctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagactagaa |
43067839 |
T |
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| Q |
129 |
ataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttcc---ttggatagatcttcctgcacggttcacttcttcttcaatgctg |
225 |
Q |
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| T |
43067838 |
atagaaatactaaggaccaaagaccatttattgtaataactatgatatgcttcccaagtagatagatcatcctgctcggttcacttcttcttcaatgctg |
43067739 |
T |
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| Q |
226 |
actttgttttattaagtcctcc |
247 |
Q |
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| T |
43067738 |
acttggtctgcttaagtcctcc |
43067717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 43082897 - 43083118
Alignment:
| Q |
29 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
128 |
Q |
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| T |
43082897 |
ctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagacgagaa |
43082996 |
T |
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| Q |
129 |
ataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttcct---tggatagatcttcctgcacggttcacttcttcttcaatgctg |
225 |
Q |
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| T |
43082997 |
atagaaatactaaggacccaagaccatttattgtaataactatgatatgcttcccaagtagatagaccatcctgctcagttcacttcttcttcaatgctg |
43083096 |
T |
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| Q |
226 |
actttgttttattaagtcctcc |
247 |
Q |
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| T |
43083097 |
acttggtctgcttaagtcctcc |
43083118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 43044053 - 43044274
Alignment:
| Q |
29 |
ctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagacgaaaa |
128 |
Q |
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||||||||||||||| ||||||||||| || ||||| ||| | ||||||| |||||||||||||||||||| ||||||||||| ||| ||| || || |
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| T |
43044053 |
ctgccaccgtcgatctagaacccagttctgagaacacaagctaagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagaagagaa |
43044152 |
T |
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| Q |
129 |
ataaaagtactacatagagcaaaccatttcttgtaatcaccataatagacttcc---ttggatagatcttcctgcacggttcacttcttcttcaatgctg |
225 |
Q |
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| T |
43044153 |
atagaaatactaaggaccaaagaccatttattgtaataactatgatatgcttcccaagtaaatagatcatcctgctcggttcacttcttcttcaatgctg |
43044252 |
T |
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| Q |
226 |
actttgttttattaagtcctcc |
247 |
Q |
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| T |
43044253 |
acttggtctgcttaagtcctcc |
43044274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 43079958 - 43079856
Alignment:
| Q |
16 |
aaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagtt |
115 |
Q |
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| T |
43079958 |
aaaagaaaaagccttgccacagtcgatatagaacccaatcctgggaacaagggctgcgagacgacggtgcagacttgacacttaatctgaaaaacaagtt |
43079859 |
T |
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| Q |
116 |
aac |
118 |
Q |
| |
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||| |
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| T |
43079858 |
aac |
43079856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 38139079 - 38139007
Alignment:
| Q |
28 |
cctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaa |
100 |
Q |
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| T |
38139079 |
cctgccaccatcaatctagaagccagttcttggaacaaaagctgtgagatgacggtgcagacttgacacttaa |
38139007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 43079802 - 43079762
Alignment:
| Q |
186 |
gatagatcttcctgcacggttcacttcttcttcaatgctga |
226 |
Q |
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| T |
43079802 |
gatagatcatcctgcacggttcccttattcttcaatgctga |
43079762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 4230525 - 4230618
Alignment:
| Q |
30 |
tgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagttaacaagac |
123 |
Q |
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| T |
4230525 |
tgccaccgtcgatctagaacccagttctgggaacaaaagctgggagatgacggtgcagacttcacacttaatccaaaaaacaacttaacaagac |
4230618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 19965696 - 19965623
Alignment:
| Q |
16 |
aaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagac |
89 |
Q |
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| T |
19965696 |
aaaagaaatggccctgccactgtcgatctagaagccagttctgggaacgaaagctgcaagacaacagtgcagac |
19965623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 4618729 - 4618826
Alignment:
| Q |
16 |
aaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacagtgcagacttgacacttaatccgaaaaacaagtt |
115 |
Q |
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|||||||||||||||||||| ||| ||| |||||| |||| | ||||||||| | || ||||||||||||||||||||||||| | | |||||||||| |
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| T |
4618729 |
aaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact--gatatgacagtgcagacttgacacttaacctgcaaaacaagtt |
4618826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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