View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4462_low_2 (Length: 510)
Name: NF4462_low_2
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4462_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 3617273 - 3617650
Alignment:
| Q |
1 |
tcatcacctacaaaataacttaaaacttatttgccataaatttatccaatgtaaaatagtttatcacttatccactattttttatcttaaaaatagggaa |
100 |
Q |
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||||||||||||||||||||||||| | ||| | ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3617273 |
tcatcacctacaaaataacttaaaattcattcactataaacttatccaatgtaaaatagtttatcacttgtccactattttttatcttaaaaatagggaa |
3617372 |
T |
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| Q |
101 |
gaagagaaaaaagaattagaggattttaggaataataatcagcagctggcttgtttgacaacgcacacacnnnnnnnnnnnnnnataaatataacgtaca |
200 |
Q |
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| T |
3617373 |
gaagagaaaaaagaattagaggattttagggataataatcagcagctggcttgtttgacaacgcacacacctctctctctct--ataaatataacgtaca |
3617470 |
T |
|
| Q |
201 |
taaattgatatacccactttctttctcctcctcgtctctggactcaactcacttctacgcacacaatgtcggcttacactaaccataaccaggatcctcg |
300 |
Q |
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| T |
3617471 |
taaattgatatacccactttctttctcctcctcttctctggactcaactcatttctacacacacaatgtcggcttacactaaccataaccaggatcctcg |
3617570 |
T |
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| Q |
301 |
tcttcatggcatcaaaactaagattcgtgtcgtccctgatttccctaaagctggtttgttctagttttacttacaacactg |
381 |
Q |
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| T |
3617571 |
tcttcatggcatcaaaactaagattcgtgtcgtccctgatttccctaaagctggtttgttct-gttttacttacaacactg |
3617650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 41966299 - 41966228
Alignment:
| Q |
290 |
caggatcctcgtcttcatggcatcaaaactaagattcgtgtcgtccctgatttccctaaagctggtttgttc |
361 |
Q |
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|||||| | ||||||||||||||||||| |||||||||||| || || ||||||| ||| ||||||||||| |
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| T |
41966299 |
caggattcccgtcttcatggcatcaaaaataagattcgtgtagttcccaatttcccaaaacctggtttgttc |
41966228 |
T |
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