View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4462_low_5 (Length: 406)

Name: NF4462_low_5
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4462_low_5
NF4462_low_5
[»] chr7 (4 HSPs)
chr7 (1-406)||(36604296-36604700)
chr7 (193-227)||(18408992-18409026)
chr7 (193-227)||(21640038-21640072)
chr7 (193-227)||(21646236-21646270)
[»] chr4 (2 HSPs)
chr4 (139-216)||(5630644-5630720)
chr4 (180-223)||(34504909-34504952)
[»] chr8 (1 HSPs)
chr8 (193-227)||(31071062-31071096)
[»] chr5 (1 HSPs)
chr5 (193-227)||(38219628-38219662)
[»] chr3 (1 HSPs)
chr3 (193-227)||(1306178-1306212)
[»] chr2 (1 HSPs)
chr2 (193-227)||(25409859-25409893)


Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 36604296 - 36604700
Alignment:
Q  1 caaaagttatttttgttaatgattcaacaagaagagtggaacaaataccaacagcaagcaaactaaatgatctagcnnnnnnnntattcaaccgagaaca 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  36604296 caaaatttatttttgttaatgattcaacaagaagagtggaacaaataccaacagcaagcaaactaaatgatctagcaaaaaaaatattcaaccgagaaca 36604395  T
Q  101 aatctagaacctatgtgcaagtgcaagtccaaatattatcactctacgattcaatagaaaaacattgaatccttcctcgaatgattcttaattacccaag 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36604396 aatctagaacctatgtgcaagtgcaattccaaatattatcactctacgattcaatagaaaaacattgaatccttcctcgaatgattcttaattacccaag 36604495  T
Q  201 gtgtttacaatgtgtttcccaacccaatgtcactctcaacccataaaacctcttttctgcactttcacattctgattcaccatcctgcaacttcagcttt 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36604496 gtgtttacaatgtgttt-ccaacccaatgtcactctcaacccataaaacctcttttctgcactttcacattctgattcaccatcctgcaacttcagcttt 36604594  T
Q  301 tataacaaggcaaaaaaccagttggtatccaaatcaacattnnnnnnnctttactatgatcggaatccccttatgcaaaaaccatcacgagacaaaaaac 400  Q
    ||||||||||||||||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36604595 tataacaaggcaaaaaaccagttgggatccaaatcaacattaaaaaaactttactatgatcggaatccccttatgcaaaaaccatcacgagacaaaaaac 36604694  T
Q  401 agaagc 406  Q
    ||||||    
T  36604695 agaagc 36604700  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 18408992 - 18409026
Alignment:
Q  193 tacccaaggtgtttacaatgtgtttcccaacccaa 227  Q
    ||||||||||||||||||||| |||||||||||||    
T  18408992 tacccaaggtgtttacaatgtttttcccaacccaa 18409026  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 21640038 - 21640072
Alignment:
Q  193 tacccaaggtgtttacaatgtgtttcccaacccaa 227  Q
    ||||||||||||||||||||| |||||||||||||    
T  21640038 tacccaaggtgtttacaatgtttttcccaacccaa 21640072  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 21646236 - 21646270
Alignment:
Q  193 tacccaaggtgtttacaatgtgtttcccaacccaa 227  Q
    ||||||||||||||||||||| |||||||||||||    
T  21646236 tacccaaggtgtttacaatgtttttcccaacccaa 21646270  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 5630720 - 5630644
Alignment:
Q  139 tcactctacgattcaatagaaaaacattgaatccttcctcgaatgattcttaattacccaaggtgtttacaatgtgtt 216  Q
    |||||||| ||||||||||| |||  ||||||| ||| || ||| |||| |||||||| |||||||||||||||||||    
T  5630720 tcactctaggattcaatagagaaagcttgaatctttc-tctaattattcataattacctaaggtgtttacaatgtgtt 5630644  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 34504909 - 34504952
Alignment:
Q  180 aatgattcttaattacccaaggtgtttacaatgtgtttcccaac 223  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||    
T  34504909 aatgattcttaattacagaaggtatttacaatgtgtttcccaac 34504952  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 227
Target Start/End: Complemental strand, 31071096 - 31071062
Alignment:
Q  193 tacccaaggtgtttacaatgtgtttcccaacccaa 227  Q
    ||||||||||||||||||||| |||||||||||||    
T  31071096 tacccaaggtgtttacaatgtttttcccaacccaa 31071062  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 38219628 - 38219662
Alignment:
Q  193 tacccaaggtgtttacaatgtgtttcccaacccaa 227  Q
    ||||||||||||||||||||| |||||||||||||    
T  38219628 tacccaaggtgtttacaatgtttttcccaacccaa 38219662  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 1306178 - 1306212
Alignment:
Q  193 tacccaaggtgtttacaatgtgtttcccaacccaa 227  Q
    ||||||||||||||||||||| |||||||||||||    
T  1306178 tacccaaggtgtttacaatgtttttcccaacccaa 1306212  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 25409859 - 25409893
Alignment:
Q  193 tacccaaggtgtttacaatgtgtttcccaacccaa 227  Q
    ||||||||||||||||||||| |||||||||||||    
T  25409859 tacccaaggtgtttacaatgtttttcccaacccaa 25409893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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