View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4462_low_6 (Length: 387)
Name: NF4462_low_6
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4462_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 52373310 - 52372952
Alignment:
| Q |
14 |
caaaggtacaattctctgctaatccataagaaggtgagatagaagaactttttaacccgaatggtgaaaaagtgtgaacaaattcaaccaccgagtctct |
113 |
Q |
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| T |
52373310 |
caaaggtacaattctctgctaatccataagaaggtgagatagaagaactttttaacccgaatggtgaaaaagtgtgaacaaattcaaccaccgagcctct |
52373211 |
T |
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| Q |
114 |
gtaaatgggttcattgatgagtataaggttattaagatttgaaagattaatgggtaaagttcctttgtgaattcctccacgttttactacaagtggtagt |
213 |
Q |
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| T |
52373210 |
gtaaatgggttcattgatgagtataaggttattaagatttgaaagattaatgggtaaagttcctttgtgaattcctccacgttttactacaagtggtagt |
52373111 |
T |
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| Q |
214 |
gtaaaagaaggaacgggggtgcaagtagcattgaatttcgacattaactcaagccagagtcttggccgtttgatgaacgatgttggagaagtgagaacac |
313 |
Q |
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| T |
52373110 |
gtaaaagaaggaacgggggtgcaagtagcattgaatttcgacattaactcaagccagagtcttggccgtttgatgaacgatgttggagaagtgagaacac |
52373011 |
T |
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| Q |
314 |
acgtggcacctgatacaattgtgagcaacagaaacatgagaccacaatcatggtattga |
372 |
Q |
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| T |
52373010 |
atgtggcacctgatacaattgtgagcaacagaaacatgagaccacaatcatggtattga |
52372952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 7702407 - 7702468
Alignment:
| Q |
304 |
gtgagaacacacgtggcacctgatacaattgtgagcaacagaaacatgagaccacaatcatg |
365 |
Q |
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| T |
7702407 |
gtgagaacaaatgtggcacctgatacaattgtgagaagcagaaacatgtgtccacaatcatg |
7702468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 4304532 - 4304593
Alignment:
| Q |
304 |
gtgagaacacacgtggcacctgatacaattgtgagcaacagaaacatgagaccacaatcatg |
365 |
Q |
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||||||||| | |||||||| |||||||||||||||| || ||| ||||| ||||||||||| |
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| T |
4304532 |
gtgagaacaaatgtggcacccgatacaattgtgagcagcataaaaatgagtccacaatcatg |
4304593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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