View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4462_low_8 (Length: 353)
Name: NF4462_low_8
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4462_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 19757109 - 19757436
Alignment:
| Q |
18 |
aaagtgaaggtcaggtttcaagatatcaagaataatagaacatgcattgtgaccagtggttggaagccatttgccaaaaaatataacttacaagttggtg |
117 |
Q |
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| T |
19757109 |
aaagtgaaggtgaggtttcaagatatcaagaataatagaacatgcattgtgactagtggttggaagccatttgccaaaaaatataacttacaagttggtg |
19757208 |
T |
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| Q |
118 |
ataaatgtaaatttgtgatgactcaacttcaaccactttcattcaccataactattacccaagccaaaggtttttctttcttactttcttggtttattta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19757209 |
ataaatgtaaatttgtgatgactcaacttcaaccactttcattcaccataactattacccaagccaaaggtttttctttcttactttctcggtttattta |
19757308 |
T |
|
| Q |
218 |
ttgttattt---nnnnnnnnnnnnnttcattgacatatgattcaccacatttgcttaatatcaattgattttctccaattcctttgaacaatgaaaaggt |
314 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19757309 |
ttgttatttaaaaaaaaataaaaaattcattgacatatgattcaccatatttgcttaatatcaattgattttctccaattcctttgaacaatgacaaggt |
19757408 |
T |
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| Q |
315 |
tatgaaggaatgatctcctgtgatgatg |
342 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
19757409 |
tatgaaggaatgatctcctgtgatgatg |
19757436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 12977395 - 12977209
Alignment:
| Q |
18 |
aaagtgaaggtcaggtttcaagatatcaagaataatagaacatgcattgtgaccagtggttggaagccatttgccaaaaaatataacttacaagttggtg |
117 |
Q |
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||||||||||| | |||||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12977395 |
aaagtgaaggtgatgtttcaagatgtcaagtataatagaacatgttttgtgaccaatggttggaagccatttgccaaaaaatataacctacaagttggca |
12977296 |
T |
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| Q |
118 |
ataaatgtaaatttgtgatgactcaacttcaaccactttcattcaccataactattacccaagccaaaggtttttctttcttacttt |
204 |
Q |
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| T |
12977295 |
atgtatgtaaatttgtgatgactcaacttcatccactttcattcaccataactattacccaagccaaaggtttttccttcttacttt |
12977209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 240 - 341
Target Start/End: Complemental strand, 12977188 - 12977092
Alignment:
| Q |
240 |
ttcattgacatatgattcaccacatttgcttaatatcaattgattttctccaattcctttgaacaatgaaaaggttatgaaggaatgatctcctgtgatg |
339 |
Q |
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| T |
12977188 |
ttcattgacatgtgattcaccacatttgcttaaactcaattgat-----ccaattcctttgaacaatgacaaggttatgaaggaataatctcttgtgatg |
12977094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 12995519 - 12995600
Alignment:
| Q |
94 |
aaaaatataacttacaagttggtgataaatgtaaatttgtgatgactcaacttcaaccactttcattcaccataactattac |
175 |
Q |
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| T |
12995519 |
aaaaatataacttacaagttggtgataaatgtaaatttgtgatgactcaaagagaaccacttttattcactattactattac |
12995600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 12991331 - 12991442
Alignment:
| Q |
64 |
ttgtgaccagtggttggaagccatttgccaaaaaatataacttacaagttggtgataaatgtaaatttgtgatgactcaacttcaaccactttcattcac |
163 |
Q |
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| T |
12991331 |
ttgtgactactggttggaaatcatttaaccaaaaatataacttacaggttggtgatgaatgtaaatttgtgatgactcaaagagaaccactttcattcac |
12991430 |
T |
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| Q |
164 |
cataactattac |
175 |
Q |
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| | |||||||| |
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| T |
12991431 |
cgttactattac |
12991442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 12989298 - 12989347
Alignment:
| Q |
94 |
aaaaatataacttacaagttggtgataaatgtaaatttgtgatgactcaa |
143 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12989298 |
aaaaatataacttagaagttggtgataaatgtaaatttgtgatgactcaa |
12989347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 12910102 - 12910167
Alignment:
| Q |
109 |
aagttggtgataaatgtaaatttgtgatgactcaacttcaaccactttcattcaccataactatta |
174 |
Q |
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| T |
12910102 |
aagttggtgatgtatgtaaatttgagatgactcaacgctaaccactttcattcacaattactatta |
12910167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 13001940 - 13001862
Alignment:
| Q |
65 |
tgtgaccagtggttggaagccatttgccaaaaaatataacttacaagttggtgataaatgtaaatttgtgatgactcaa |
143 |
Q |
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|||||||| ||||||||| ||||| ||||| |||||| || ||| |||||||| ||||||||||||||||||||| |
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| T |
13001940 |
tgtgaccactggttggaacacatttagcaaaagatataatttgcaacttggtgatgtttgtaaatttgtgatgactcaa |
13001862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 21115964 - 21116026
Alignment:
| Q |
112 |
ttggtgataaatgtaaatttgtgatgactcaacttcaaccactttcattcaccataactatta |
174 |
Q |
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|||||||| ||||||||||| ||||||||||| | |||||||||||||||| || ||||||| |
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| T |
21115964 |
ttggtgatgcatgtaaatttgagatgactcaacgtgaaccactttcattcacaattactatta |
21116026 |
T |
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