View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4462_low_9 (Length: 345)
Name: NF4462_low_9
Description: NF4462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4462_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 36603932 - 36604267
Alignment:
| Q |
10 |
acatcatcatcaatgcaaccagtctgatcatagagagcccgtttctcttcatctccaagaatggaaataactttttgcaattgctggaatttctctttag |
109 |
Q |
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| T |
36603932 |
acatcatcatcaatgcaaccagtctgatcatagagagcccgtttctcttcatctccaagaatggaaataactttttgcaattgctggaatttctctttag |
36604031 |
T |
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| Q |
110 |
cctcctgtatgaacacaagtaattataattaccaacccaaaaaagccaacaaacaaataataaagtataaacgcaatccacagcataacaagcggcctta |
209 |
Q |
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| T |
36604032 |
cctcctgtatgaacacaagtaattataattaccaacccaaaaaagccaacaaacaaataataaaatataaacgcaatccacagcataacaagcagcctta |
36604131 |
T |
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| Q |
210 |
aagaatcacctcatcaccaggatttttatccggatggagacgcaatgccaatttgtaatagcccttctttatttcttgttgagaggccgctttatccaaa |
309 |
Q |
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| T |
36604132 |
aagaatcacctcatcaccaggatttttatccggatggagccgcaatgccaatttgtaataggccttctttatttcttgttgagaggccgttttctccaaa |
36604231 |
T |
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| Q |
310 |
ccaataacctaaaatcaaaccaacaaaagctttagc |
345 |
Q |
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| T |
36604232 |
ccaagaacctacaatcaaaccaacaacagatttagc |
36604267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 20991097 - 20991006
Alignment:
| Q |
25 |
caaccagtctgatcatagagagcccgtttctcttcatctccaagaatggaaataactttttgcaattgctggaatttctctttagcctcctg |
116 |
Q |
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| T |
20991097 |
caaccagtttcatcataaagtgcccgtttttcttcatccccgagaatggagataacattttgcaattgctgaaacttggctttagcttcctg |
20991006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 289
Target Start/End: Complemental strand, 20989771 - 20989699
Alignment:
| Q |
217 |
acctcatcaccaggatttttatccggatggagacgcaatgccaatttgtaatagcccttctttatttcttgtt |
289 |
Q |
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| T |
20989771 |
acctcatcaccaggattcttatcaggatgaagtctcaacgccaatttatgatacgccttctttatttcttgtt |
20989699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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