View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4463-Insertion-2 (Length: 241)

Name: NF4463-Insertion-2
Description: NF4463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4463-Insertion-2
NF4463-Insertion-2
[»] chr5 (16 HSPs)
chr5 (8-241)||(37704226-37704459)
chr5 (95-241)||(37595888-37596037)
chr5 (87-241)||(37391389-37391543)
chr5 (95-241)||(37641439-37641585)
chr5 (95-241)||(37534658-37534804)
chr5 (87-241)||(37698351-37698505)
chr5 (95-241)||(37713182-37713328)
chr5 (118-241)||(37380802-37380925)
chr5 (93-241)||(37441504-37441650)
chr5 (8-88)||(37437445-37437525)
chr5 (130-241)||(37825471-37825582)
chr5 (87-219)||(37411754-37411886)
chr5 (8-78)||(37698571-37698641)
chr5 (87-225)||(37437275-37437413)
chr5 (125-230)||(37399289-37399394)
chr5 (87-241)||(37430315-37430469)
[»] chr3 (1 HSPs)
chr3 (95-241)||(14554617-14554760)
[»] chr4 (3 HSPs)
chr4 (87-241)||(16841327-16841481)
chr4 (95-241)||(24216193-24216339)
chr4 (22-88)||(16841203-16841272)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 37704459 - 37704226
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704459 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattc 37704360  T
Q  108 tattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgcctt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704359 tattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgcctt 37704260  T
Q  208 gttacaattcaaacactcattttctgtcaacact 241  Q
    ||||||||||||||||||||||||||||||||||    
T  37704259 gttacaattcaaacactcattttctgtcaacact 37704226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 37596037 - 37595888
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattg---ctgcttactcattttacttcctacactttctcattgtgcagccaac 191  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||||| |||   |||||||||||||||||||||||||||||||||||||||| | |||    
T  37596037 tccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaac 37595938  T
Q  192 atgatagctccgccttgttacaattcaaacactcattttctgtcaacact 241  Q
    |||| | ||| |||||||||||||||||| |||| |||||||||||||||    
T  37595937 atgacaactctgccttgttacaattcaaaaactctttttctgtcaacact 37595888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 37391389 - 37391543
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| ||||||| |||||| |||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||| ||| ||||||||||||     
T  37391389 aaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctatactctctcattgtgcaa 37391488  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacact 241  Q
    ||  ||||||||||| |||||| ||||||||||| ||||||||| ||||||||||    
T  37391489 ccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacact 37391543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 37641585 - 37641439
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||| ||||||||||||||| |||||||| || ||||| ||| || ||||||||||||||||||||||||||||| |||||| ||||||||    
T  37641585 tccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttctcactgtgcaaccaacatg 37641486  T
Q  195 atagctccgccttgttacaattcaaacactcattttctgtcaacact 241  Q
    | | ||| |||||||||||||||||| |||| |||||||||||||||    
T  37641485 acacctctgccttgttacaattcaaaaactctttttctgtcaacact 37641439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 37534804 - 37534658
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||||| ||| || ||||||||||||||||||||||||||||| |||||| | ||||||    
T  37534804 tccttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatg 37534705  T
Q  195 atagctccgccttgttacaattcaaacactcattttctgtcaacact 241  Q
    | | ||| |||||||||||||||||| |||| |||||||||| ||||    
T  37534704 acaactctgccttgttacaattcaaaaactctttttctgtcagcact 37534658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 87 - 241
Target Start/End: Complemental strand, 37698505 - 37698351
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||| |||||||| ||| |||||||||||||||||||||||||  ||||||| ||||     
T  37698505 aaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctcattatgcaa 37698406  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacact 241  Q
    ||| ||||| || || |||||||||||||||||| |||||||||| || ||||||    
T  37698405 ccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacact 37698351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 37713328 - 37713182
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||| ||||||||||||||| |||||||| |||| ||| ||| |||||||||||||||||||| ||||||||||| |||||| | ||||||    
T  37713328 tccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccacactttctcactgtgcaacaaacatg 37713229  T
Q  195 atagctccgccttgttacaattcaaacactcattttctgtcaacact 241  Q
    | | ||| |||||||||||||||||| |||| |||||||||||||||    
T  37713228 acaactctgccttgttacaattcaaaaactctttttctgtcaacact 37713182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 37380802 - 37380925
Alignment:
Q  118 ttttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattc 217  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| |||||||||||  || ||||||||||| |||    
T  37380802 ttttacctttcacttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttc 37380901  T
Q  218 aaacactcattttctgtcaacact 241  Q
    ||| ||||||||||| ||||||||    
T  37380902 aaaaactcattttctttcaacact 37380925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 241
Target Start/End: Complemental strand, 37441650 - 37441504
Alignment:
Q  93 ggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaaca 192  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||| || |||||||||||||||||||||||||| ||||||||| |||| | | ||||    
T  37441650 ggtccttttttattttattgccttattttacctttcacatgttcttcttgttgctgcttactcattttacttcctatactttctcactgtgaaacaaaca 37441551  T
Q  193 tgatagctccgccttgttacaattcaaacactcattttctgtcaacact 241  Q
    ||| | ||| |||||||||||||||||| ||||  |||| |||||||||    
T  37441550 tgacacctctgccttgttacaattcaaaaactc--tttcagtcaacact 37441504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 37437525 - 37437445
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaa 88  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37437525 tttggtccttgccccttagtttcaagttatgtttcctatataaatagaggctaatcatttggtatatcctaaatcatcaaa 37437445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 37825582 - 37825471
Alignment:
Q  130 cttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacactcattt 229  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||| |||||| | ||||||| | ||| |||||||||||||||||| |||| |||    
T  37825582 cttgttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttt 37825483  T
Q  230 tctgtcaacact 241  Q
    ||||||||||||    
T  37825482 tctgtcaacact 37825471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 37411754 - 37411886
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| |||||| |||| |||||||| | |||||||| |||||||||||||||||  ||||| |||||||||||||||||||||| |||||||| ||||     
T  37411754 aaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcctacaccttctcattatgcaa 37411853  T
Q  187 ccaacatgatagctccgccttgttacaattcaa 219  Q
    | | ||||| ||||  |||||||||||||||||    
T  37411854 ctatcatgacagctttgccttgttacaattcaa 37411886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 37698641 - 37698571
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta 78  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37698641 tttggtcctttccccgtagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta 37698571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 87 - 225
Target Start/End: Complemental strand, 37437413 - 37437275
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| |||||||||||||||| ||||||| |||| |  |||||||||||| ||| ||| |||||||||| |||||| || ||||||||||||| ||||     
T  37437413 aaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattatgcaa 37437314  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactc 225  Q
    ||| ||||| | ||| ||||| |||||||||||| ||||    
T  37437313 ccatcatgacacctctgccttattacaattcaaaaactc 37437275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 230
Target Start/End: Original strand, 37399289 - 37399394
Alignment:
Q  125 tttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacact 224  Q
    ||||||||||||||||| ||| || |||||||||||||||| |||||||||||| | |||| ||| ||||| | ||| |||||||||||||||||| | |    
T  37399289 tttcacttgttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaatt 37399388  T
Q  225 catttt 230  Q
    ||||||    
T  37399389 catttt 37399394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 241
Target Start/End: Complemental strand, 37430469 - 37430315
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| ||||||||| | ||||||| |||||| || | |||||||||||||||||  ||||||| |||| |||||||||||| || || ||| ||||||     
T  37430469 aaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgtgcaa 37430370  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacact 241  Q
     || ||||| || || |||||||||||||||||  | ||||||| | ||||||||    
T  37430369 gcatcatgacagttctgccttgttacaattcaagaattcattttttatcaacact 37430315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 14554760 - 14554617
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||||||||||||||||||| |||||||| |||||   |||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  14554760 tccttttttattctattgccttattttacctttcactttttctt---attgttgcttactcattttacttcctatactttctcattgtgcaaccaacatg 14554664  T
Q  195 atagctccgccttgttacaattcaaacactcattttctgtcaacact 241  Q
    | | ||| |||||||||||||||||| |||| |||||||||||||||    
T  14554663 acacctctgccttgttacaattcaaaaactctttttctgtcaacact 14554617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 87 - 241
Target Start/End: Original strand, 16841327 - 16841481
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| |||||||||||||| | ||||||| |||| |  |||||||||||||  |  ||||||||||||| ||||||||  ||||||| ||||| ||||     
T  16841327 aaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattctgcaa 16841426  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacact 241  Q
    ||||||||| ||||| || |||||||| |||||| ||||||||||||||||||||    
T  16841427 ccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacact 16841481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 95 - 241
Target Start/End: Original strand, 24216193 - 24216339
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||||| ||||| |||| || |||||||||||| |||| ||| ||||||||||||||||||| ||||||| |||||| |||| ||| ||||    
T  24216193 tccttttttattctaatgcctcatttgacctttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattctgcaaccatcatg 24216292  T
Q  195 atagctccgccttgttacaattcaaacactcattttctgtcaacact 241  Q
    | || || || ||||||||||||||  ||||||||  ||||||||||    
T  24216293 acagttctgcattgttacaattcaagaactcatttgttgtcaacact 24216339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 16841203 - 16841272
Alignment:
Q  22 cttagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctaaatcatcaaa 88  Q
    ||||||||||||||||||||||||||||||||   ||||||||||| |||||||||| ||||||||||||    
T  16841203 cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaa 16841272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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