View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4463_high_1 (Length: 361)
Name: NF4463_high_1
Description: NF4463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4463_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 40635899 - 40636252
Alignment:
| Q |
1 |
caattacctgtacgtaaggtgttgagaagccagatgagtaaaattgctatcactagtcttgagttttctgaagcattgcctttttctgcttttgcttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40635899 |
caattacctgtacgtaaggtgttgagaagccagatgagtaaaattgctatcactagtcttgagttttctgaagcattgccttttgctgcttttgcttctt |
40635998 |
T |
|
| Q |
101 |
tgcttgtggaaacggtggcaaaactggatttgataattgatgaagttgaagaacttgggaggttggcgtgtttcaaagagtatacacctggcgatgagtt |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40635999 |
tgctcgtggaaacggtggcaaaactggatttgataattgatgaagttgaagaacttgggagattggcgtgtttcaaagagtatacacctggcgatgagtt |
40636098 |
T |
|
| Q |
201 |
ttctattagttgtgagaaaccaagagttgatgttttggagaaccatttaccttctcatgggggagagtgattctgaatgggagcagggaaatacatcaat |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||| ||| |
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| T |
40636099 |
ttctattagttgtgagaaaccaagagttgatgttttggagaaccatttaccttctcatggaggagagtgattctgaatgggagtaaggaaatacattaat |
40636198 |
T |
|
| Q |
301 |
ttcataatatataatactgattattcactaatatataaatgattgtgatgatgt |
354 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40636199 |
ttcataatatataatactgattattcactaatatataaatgattgtgatgatgt |
40636252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 12 - 352
Target Start/End: Original strand, 40647873 - 40648213
Alignment:
| Q |
12 |
acgtaaggtgttgagaagccagatgagtaaaattgctatcactagtcttgagttttctgaagcattgcctttttctgcttttgcttctttgcttgtggaa |
111 |
Q |
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|||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| |
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|
| T |
40647873 |
acgtaaggcattgagaagccagatgagtaaaattgttattactagtcttgagttttctgaagcattgccttttgctgcttttgtttcattgcttgtggaa |
40647972 |
T |
|
| Q |
112 |
acggtggcaaaactggatttgataattgatgaagttgaagaacttgggaggttggcgtgtttcaaagagtatacacctggcgatgagttttctattagtt |
211 |
Q |
| |
|
|| ||||| |||||||| || |||||||||||||||||||||||||| ||||||| |||||||||||||||| || ||| ||||| |||||| |||| | |
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| T |
40647973 |
accgtggcgaaactggacttaataattgatgaagttgaagaacttggtcggttggcatgtttcaaagagtatagacatggtgatgaattttctgttagat |
40648072 |
T |
|
| Q |
212 |
gtgagaaaccaagagttgatgttttggagaaccatttaccttctcatgggggagagtgattctgaatgggagcagggaaatacatcaatttcataatata |
311 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| ||||||||||| ||||| ||| | ||| ||||| |||||||||| | |||||| ||||| |
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| T |
40648073 |
gtgagaaaccaagagttgatgtgatggacaaccatttcccttctcatggaggagattgagtttgataaagagcaaggaaatacattattttcatgatata |
40648172 |
T |
|
| Q |
312 |
taatactgattattcactaatatataaatgattgtgatgat |
352 |
Q |
| |
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||||| ||||||| ||| | |||| ||||||||||||| |
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| T |
40648173 |
taatatcgattatttgctattctatatttgattgtgatgat |
40648213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 4780199 - 4779969
Alignment:
| Q |
30 |
ccagatgagtaaaattgctatcactagtcttgagttttctgaagcattgcctttttctgcttttgcttctttgcttgtggaaacggtggcaaaactggat |
129 |
Q |
| |
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|||| |||||||||||||||||||||||||||| || ||||| ||| | |||||| |||||||||| ||||||||||||||||| || |||||| ||||| |
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| T |
4780199 |
ccagttgagtaaaattgctatcactagtcttgaattctctgaggcacttccttttgctgcttttgcatctttgcttgtggaaacagttgcaaaattggat |
4780100 |
T |
|
| Q |
130 |
ttgataattgatgaagttgaagaacttgggaggttggcgtgtttcaaagagtatacacctggcgatgagttttctattagttgtgagaaaccaagagttg |
229 |
Q |
| |
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| | ||||| |||||||||||||||||||| || | || || ||||||| || | ||||||||||| || | | | ||||||| |||| |||||| |
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| T |
4780099 |
cttgttattgaggaagttgaagaacttgggagattagattgctttaaagagtttagagctggcgatgagcttgttgtgacttgtgaggaacctcgagttg |
4780000 |
T |
|
| Q |
230 |
atgttttggagaaccatttaccttctcatgg |
260 |
Q |
| |
|
|||||| | |||| | |||||||||||||| |
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| T |
4779999 |
atgtttcgcggaacaacttaccttctcatgg |
4779969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 16865243 - 16865366
Alignment:
| Q |
98 |
ctttgcttgtggaaacggtggcaaaactggatttgataattgatgaagttgaagaacttgggaggttggcgtgtttcaaagagtatacacctggcgatga |
197 |
Q |
| |
|
|||||||| ||||||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| ||||| |
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| T |
16865243 |
ctttgcttttggaaacggtgatgaaactcgacttaataattgatgaagttgaagaacttgggaggttagcgtgcttcaaagagtatatacctggtgatga |
16865342 |
T |
|
| Q |
198 |
gttttctattagttgtgagaaacc |
221 |
Q |
| |
|
|||||| |||||| ||||||||| |
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| T |
16865343 |
attttctgttagttctgagaaacc |
16865366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 16861967 - 16862034
Alignment:
| Q |
35 |
tgagtaaaattgctatcactagtcttgagttttctgaagcattgcctttttctgcttttgcttctttg |
102 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16861967 |
tgagtaaaatggctatcactagtcttgagttttctgaagcattgccttttgctgcttttgcttctttg |
16862034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 51862864 - 51862940
Alignment:
| Q |
49 |
atcactagtcttgagttttctgaagcattgcctttttctgcttttgcttctttgcttgtggaaacggtggcaaaact |
125 |
Q |
| |
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|||||||| |||||||| || |||||| | |||||| ||||||| |||||||||||||||||| |||||||||||| |
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| T |
51862864 |
atcactagccttgagttctcagaagcactaccttttgctgctttcacttctttgcttgtggaaatggtggcaaaact |
51862940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 51822749 - 51822825
Alignment:
| Q |
49 |
atcactagtcttgagttttctgaagcattgcctttttctgcttttgcttctttgcttgtggaaacggtggcaaaact |
125 |
Q |
| |
|
|||||||| |||||||| || |||||| |||| ||| ||||||| ||||| |||| ||||| | |||||||||||| |
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|
| T |
51822749 |
atcactagccttgagttctcagaagcactgccctttgctgctttcacttctatgctagtggagatggtggcaaaact |
51822825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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