View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4463_high_2 (Length: 238)

Name: NF4463_high_2
Description: NF4463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4463_high_2
NF4463_high_2
[»] chr3 (18 HSPs)
chr3 (1-228)||(38469182-38469417)
chr3 (116-228)||(51125232-51125344)
chr3 (116-228)||(52692664-52692776)
chr3 (1-116)||(51128991-51129106)
chr3 (1-116)||(47141378-47141493)
chr3 (1-116)||(52692041-52692156)
chr3 (3-116)||(1527647-1527760)
chr3 (1-108)||(47697113-47697220)
chr3 (1-63)||(33025798-33025860)
chr3 (1-63)||(48181105-48181167)
chr3 (1-61)||(11263727-11263787)
chr3 (1-60)||(30809845-30809904)
chr3 (1-60)||(44610827-44610886)
chr3 (1-64)||(53687376-53687439)
chr3 (1-63)||(42074428-42074490)
chr3 (1-63)||(42274554-42274616)
chr3 (1-61)||(48254506-48254566)
chr3 (19-63)||(51229781-51229825)
[»] chr8 (16 HSPs)
chr8 (116-228)||(193509-193621)
chr8 (116-228)||(721113-721225)
chr8 (116-228)||(882220-882332)
chr8 (116-228)||(30210706-30210818)
chr8 (116-228)||(30983072-30983184)
chr8 (1-116)||(30984278-30984393)
chr8 (1-116)||(34774324-34774439)
chr8 (1-116)||(30210508-30210623)
chr8 (116-228)||(44240244-44240356)
chr8 (28-116)||(189774-189862)
chr8 (28-116)||(717378-717466)
chr8 (28-116)||(878485-878573)
chr8 (1-41)||(629476-629516)
chr8 (1-63)||(35164381-35164443)
chr8 (1-63)||(35802344-35802406)
chr8 (1-63)||(45276403-45276465)
[»] chr2 (15 HSPs)
chr2 (116-228)||(14380229-14380341)
chr2 (1-116)||(14379774-14379889)
chr2 (1-116)||(40254458-40254573)
chr2 (1-110)||(31686770-31686879)
chr2 (1-103)||(44282608-44282710)
chr2 (1-102)||(31786813-31786914)
chr2 (116-228)||(14036738-14036850)
chr2 (116-228)||(13896121-13896233)
chr2 (116-229)||(5916793-5916906)
chr2 (116-229)||(36311719-36311832)
chr2 (19-95)||(2443663-2443739)
chr2 (1-60)||(37551594-37551653)
chr2 (1-63)||(17480850-17480912)
chr2 (1-63)||(37640761-37640823)
chr2 (2-60)||(44002684-44002742)
[»] chr1 (18 HSPs)
chr1 (116-228)||(50978788-50978900)
chr1 (1-116)||(27000243-27000358)
chr1 (1-116)||(38843265-38843380)
chr1 (1-116)||(51488472-51488587)
chr1 (1-116)||(5271480-5271595)
chr1 (1-116)||(7593180-7593295)
chr1 (1-116)||(50979212-50979327)
chr1 (1-103)||(38627652-38627754)
chr1 (1-104)||(26821496-26821599)
chr1 (1-103)||(36496041-36496143)
chr1 (116-228)||(46407610-46407722)
chr1 (1-90)||(15353342-15353431)
chr1 (116-228)||(35606451-35606564)
chr1 (116-229)||(35569755-35569868)
chr1 (1-73)||(27576009-27576081)
chr1 (1-60)||(1762254-1762313)
chr1 (1-63)||(47655888-47655950)
chr1 (19-63)||(6706186-6706230)
[»] chr7 (6 HSPs)
chr7 (1-116)||(31012379-31012494)
chr7 (1-116)||(25341421-25341536)
chr7 (19-73)||(41064663-41064717)
chr7 (116-228)||(37638825-37638937)
chr7 (116-228)||(10372565-10372677)
chr7 (1-63)||(25970469-25970531)
[»] chr5 (13 HSPs)
chr5 (1-116)||(3260815-3260930)
chr5 (1-116)||(29542418-29542533)
chr5 (1-116)||(42663470-42663585)
chr5 (1-103)||(14082927-14083029)
chr5 (1-103)||(33115070-33115172)
chr5 (116-228)||(27738412-27738524)
chr5 (116-228)||(33232579-33232691)
chr5 (116-228)||(7071881-7071993)
chr5 (116-229)||(22481637-22481750)
chr5 (116-151)||(21022303-21022338)
chr5 (1-60)||(2526320-2526379)
chr5 (1-37)||(53693-53729)
chr5 (1-37)||(40979455-40979491)
[»] chr4 (17 HSPs)
chr4 (1-116)||(24246654-24246769)
chr4 (1-116)||(31431012-31431127)
chr4 (1-116)||(18140488-18140603)
chr4 (1-116)||(24038038-24038153)
chr4 (1-116)||(39382934-39383049)
chr4 (1-116)||(49127701-49127816)
chr4 (116-228)||(24036063-24036175)
chr4 (116-228)||(56560630-56560742)
chr4 (116-228)||(52056842-52056954)
chr4 (119-209)||(51806037-51806127)
chr4 (116-229)||(16565661-16565774)
chr4 (1-86)||(51834225-51834310)
chr4 (1-60)||(16203097-16203156)
chr4 (1-60)||(39732846-39732905)
chr4 (1-60)||(50523874-50523933)
chr4 (1-63)||(53404111-53404173)
chr4 (1-61)||(22606362-22606422)
[»] chr6 (8 HSPs)
chr6 (116-228)||(30019342-30019454)
chr6 (1-116)||(30018887-30019002)
chr6 (116-228)||(21515552-21515664)
chr6 (116-229)||(16547578-16547691)
chr6 (116-228)||(17830618-17830730)
chr6 (1-60)||(4146848-4146907)
chr6 (20-73)||(31746179-31746232)
chr6 (1-37)||(30134183-30134219)
[»] scaffold0394 (1 HSPs)
scaffold0394 (116-228)||(6451-6563)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 38469182 - 38469417
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38469182 caaaagcaattctagttgaagctacaattcttagcttcttactttcctataatcaattctacaccctcaattctattaattccatccctgccctcattaa 38469281  T
Q  101 tttttctaacccttcttcaa---atagttgtc-----gcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtt 192  Q
    |||||||||||||||| |||   |   || ||     |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38469282 tttttctaacccttctccaaccgaattttttctttctgcaacagtggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtt 38469381  T
Q  193 tatgaagatgaaagcacagtcattcatcatgatgat 228  Q
    ||||||||||||||||||||||||||||||||||||    
T  38469382 tatgaagatgaaagcacagtcattcatcatgatgat 38469417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 51125344 - 51125232
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51125344 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 51125245  T
Q  216 tcatcatgatgat 228  Q
    |||||||||||||    
T  51125244 tcatcatgatgat 51125232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 52692664 - 52692776
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52692664 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 52692763  T
Q  216 tcatcatgatgat 228  Q
    |||||||||||||    
T  52692764 tcatcatgatgat 52692776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 51129106 - 51128991
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51129106 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 51129007  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  51129006 tttttctaacccttct 51128991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 47141493 - 47141378
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47141493 caaaagcaattctagttgaagctacaattcctagcttcttactttcttagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 47141394  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  47141393 tttttctaacccttct 47141378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 52692041 - 52692156
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52692041 caaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 52692140  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  52692141 tttttctaacccttct 52692156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 1527647 - 1527760
Alignment:
Q  3 aaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaatt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  1527647 aaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccattcctgccctcattaatt 1527746  T
Q  103 tttctaacccttct 116  Q
    ||||||||||||||    
T  1527747 tttctaacccttct 1527760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 47697113 - 47697220
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47697113 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 47697212  T
Q  101 tttttcta 108  Q
    ||||||||    
T  47697213 tttttcta 47697220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33025860 - 33025798
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    |||||||||||||  || ||||||||||||||||||| |  |||||||| |||||||||||||    
T  33025860 caaaagcaattctccttaaagctacaattcctagcttttggctttcctataatcaattctaca 33025798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 48181105 - 48181167
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    |||||||||||||  || || |||||||||||||||| |  ||||||||||||||||||||||    
T  48181105 caaaagcaattctccttaaaactacaattcctagcttttggctttcctagaatcaattctaca 48181167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11263727 - 11263787
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 61  Q
    ||||||||||| |  |||||||||||| ||||||||| |  ||||||||||||||||||||    
T  11263727 caaaagcaattatccttgaagctacaaatcctagcttttggctttcctagaatcaattcta 11263787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 30809845 - 30809904
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 60  Q
    ||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  30809845 caaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 30809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 44610886 - 44610827
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 60  Q
    ||||||||||||| ||||||||||||||| ||||||| | | |||  |||||||||||||    
T  44610886 caaaagcaattctggttgaagctacaatttctagcttttgagtttattagaatcaattct 44610827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 53687439 - 53687376
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacac 64  Q
    ||||||||||||| ||| |||||||||||||||| || |  |||| ||| ||||||||||||||    
T  53687439 caaaagcaattcttgttaaagctacaattcctaggttttggcttttctaaaatcaattctacac 53687376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42074428 - 42074490
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    ||||| |||||||  || ||||||||||||||||||| | ||||| || ||||||||||||||    
T  42074428 caaaaacaattctccttaaagctacaattcctagcttttgactttgctcgaatcaattctaca 42074490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42274554 - 42274616
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    |||||||||||||  || ||| ||||||||||||||| |  ||||| ||||||||||||||||    
T  42274554 caaaagcaattctccttaaagttacaattcctagcttttggctttcatagaatcaattctaca 42274616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 48254566 - 48254506
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 61  Q
    ||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||    
T  48254566 caaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattcta 48254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 51229781 - 51229825
Alignment:
Q  19 aagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    ||||||||||||||| ||| |  ||||||||||||||||||||||    
T  51229781 aagctacaattcctaacttttggctttcctagaatcaattctaca 51229825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 193509 - 193621
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  193509 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 193608  T
Q  216 tcatcatgatgat 228  Q
    |||||||||||||    
T  193609 tcatcatgatgat 193621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 721113 - 721225
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  721113 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 721212  T
Q  216 tcatcatgatgat 228  Q
    |||||||||||||    
T  721213 tcatcatgatgat 721225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 882220 - 882332
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  882220 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 882319  T
Q  216 tcatcatgatgat 228  Q
    |||||||||||||    
T  882320 tcatcatgatgat 882332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 30210706 - 30210818
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210706 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 30210805  T
Q  216 tcatcatgatgat 228  Q
    |||||||||||||    
T  30210806 tcatcatgatgat 30210818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 30983184 - 30983072
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30983184 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 30983085  T
Q  216 tcatcatgatgat 228  Q
    |||||||||||||    
T  30983084 tcatcatgatgat 30983072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 30984393 - 30984278
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30984393 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 30984294  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  30984293 tttttctaacccttct 30984278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 34774439 - 34774324
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34774439 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 34774340  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  34774339 tttttctaacccttct 34774324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 30210508 - 30210623
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  30210508 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgtcctcattaa 30210607  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  30210608 tttttctaacccttct 30210623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 44240244 - 44240356
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||||| ||||    
T  44240244 ttcaaatagttgtcgcaacaatggctatacgcaactttatctgaaggaaggcataaattgatattgattttaatgtttatgaagatgaaagcacaatcat 44240343  T
Q  216 tcatcatgatgat 228  Q
    ||| |||||||||    
T  44240344 tcaccatgatgat 44240356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 189774 - 189862
Alignment:
Q  28 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaatttttctaacccttct 116  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  189774 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttct 189862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 717378 - 717466
Alignment:
Q  28 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaatttttctaacccttct 116  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  717378 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttct 717466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 878485 - 878573
Alignment:
Q  28 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaatttttctaacccttct 116  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  878485 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttct 878573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 629516 - 629476
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttctta 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  629516 caaaagcaattctagttgaagctacaattcctagcttctta 629476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 35164443 - 35164381
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    |||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  35164443 caaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 35164381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 35802406 - 35802344
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    ||||||||||| |  |||||||||||  ||||||||| |  ||||||||||||||||||||||    
T  35802406 caaaagcaattatccttgaagctacatatcctagcttttggctttcctagaatcaattctaca 35802344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 45276465 - 45276403
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    ||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  45276465 caaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 45276403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 14380229 - 14380341
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14380229 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 14380328  T
Q  216 tcatcatgatgat 228  Q
    |||||||||||||    
T  14380329 tcatcatgatgat 14380341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 14379774 - 14379889
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14379774 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 14379873  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  14379874 tttttctaacccttct 14379889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 40254458 - 40254573
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40254458 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 40254557  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  40254558 tttttctaacccttct 40254573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31686879 - 31686770
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31686879 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 31686780  T
Q  101 tttttctaac 110  Q
    ||||||||||    
T  31686779 tttttctaac 31686770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 44282608 - 44282710
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44282608 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 44282707  T
Q  101 ttt 103  Q
    |||    
T  44282708 ttt 44282710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 31786813 - 31786914
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31786813 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 31786912  T
Q  101 tt 102  Q
    ||    
T  31786913 tt 31786914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 14036738 - 14036850
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||    
T  14036738 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaattgatattgattttaatgtttatgaagatgaaagcacaatcat 14036837  T
Q  216 tcatcatgatgat 228  Q
    ||| |||||||||    
T  14036838 tcaccatgatgat 14036850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 13896121 - 13896233
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||  ||||    
T  13896121 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaattgatattgattttaatgtttatgaagatgaaagcacgatcat 13896220  T
Q  216 tcatcatgatgat 228  Q
    ||| |||||||||    
T  13896221 tcaccatgatgat 13896233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 5916906 - 5916793
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  5916906 ttcatatagttgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 5916807  T
Q  216 tcatcatgatgatg 229  Q
    ||| ||||||||||    
T  5916806 tcaccatgatgatg 5916793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 36311719 - 36311832
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  36311719 ttcatatagttgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 36311818  T
Q  216 tcatcatgatgatg 229  Q
    ||| ||||||||||    
T  36311819 tcaccatgatgatg 36311832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 2443739 - 2443663
Alignment:
Q  19 aagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctc 95  Q
    ||||||||||||||||||| |  |||| ||||||||||||||||||||||||||| || |||| |||| ||||||||    
T  2443739 aagctacaattcctagcttatgccttttctagaatcaattctacaccctcaattccatcaattccatcactgccctc 2443663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37551594 - 37551653
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 60  Q
    ||||||||||||| |||||||||||||||||||| |||| | ||  ||||||||||||||    
T  37551594 caaaagcaattctggttgaagctacaattcctagtttctgagttaactagaatcaattct 37551653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 17480850 - 17480912
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    ||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  17480850 caaaagcaattatctttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 17480912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 37640823 - 37640761
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    ||||||||||| |  |||||||||||| || |||||| |  ||||||||||||||||||||||    
T  37640823 caaaagcaattatccttgaagctacaaatcttagcttttggctttcctagaatcaattctaca 37640761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 44002684 - 44002742
Alignment:
Q  2 aaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 60  Q
    |||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  44002684 aaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 44002742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 50978900 - 50978788
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50978900 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 50978801  T
Q  216 tcatcatgatgat 228  Q
    |||||||||||||    
T  50978800 tcatcatgatgat 50978788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 27000358 - 27000243
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27000358 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 27000259  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  27000258 tttttctaacccttct 27000243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 38843265 - 38843380
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38843265 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 38843364  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  38843365 tttttctaacccttct 38843380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 51488587 - 51488472
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51488587 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 51488488  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  51488487 tttttctaacccttct 51488472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 5271595 - 5271480
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5271595 caaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 5271496  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  5271495 tttttctaacccttct 5271480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7593295 - 7593180
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  7593295 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctccaccctcaattctattaattccatccctgccctcattaa 7593196  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  7593195 tttttctaacccttct 7593180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 50979327 - 50979212
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  50979327 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgacctcattaa 50979228  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  50979227 tttttctaacccttct 50979212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 38627652 - 38627754
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627652 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 38627751  T
Q  101 ttt 103  Q
    |||    
T  38627752 ttt 38627754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 26821496 - 26821599
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26821496 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 26821595  T
Q  101 tttt 104  Q
    ||||    
T  26821596 tttt 26821599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 36496143 - 36496041
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36496143 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 36496044  T
Q  101 ttt 103  Q
    |||    
T  36496043 ttt 36496041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 46407610 - 46407722
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||  ||||    
T  46407610 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaattgatattgattttaatgtttatgaagatgaaagcacgatcat 46407709  T
Q  216 tcatcatgatgat 228  Q
    ||| |||||||||    
T  46407710 tcaccatgatgat 46407722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 15353342 - 15353431
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctg 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15353342 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctg 15353431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 35606451 - 35606564
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaa-tgtttatgaagatgaaagcacagtca 214  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| || ||| |||||| |||||||| |||||||||||||||||||||  |||    
T  35606451 ttcaaatagctgtcgcaacaatgactatacacaactttatccgaaggaagacaaaaattgatattgattttaattgtttatgaagatgaaagcacgttca 35606550  T
Q  215 ttcatcatgatgat 228  Q
    ||||||||||||||    
T  35606551 ttcatcatgatgat 35606564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 35569868 - 35569755
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||| ||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  35569868 ttcatatagttgtcgcaacaatggcaatacacaactttattagaaagagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 35569769  T
Q  216 tcatcatgatgatg 229  Q
    ||| ||||||||||    
T  35569768 tcaccatgatgatg 35569755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27576009 - 27576081
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 73  Q
    |||||||||||||   | ||| |||||||  |||||||| ||||| |||||||||||||||||||||||||||    
T  27576009 caaaagcaattctccataaagttacaatttttagcttctgacttttctagaatcaattctacaccctcaattc 27576081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1762254 - 1762313
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 60  Q
    ||||||||||||| ||||||||||||||||||| ||| | | ||| ||||||||||||||    
T  1762254 caaaagcaattctggttgaagctacaattcctaacttttaagtttactagaatcaattct 1762313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 47655950 - 47655888
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    ||||||||||| |  || ||||||||| ||||||||||| ||||| |||||||||||||||||    
T  47655950 caaaagcaattatccttaaagctacaaatcctagcttctaacttttctagaatcaattctaca 47655888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 6706186 - 6706230
Alignment:
Q  19 aagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    ||||||||| |||||||||||  |||| |||||||||||||||||    
T  6706186 aagctacaaatcctagcttctagcttttctagaatcaattctaca 6706230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 31012494 - 31012379
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31012494 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 31012395  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  31012394 tttttctaacccttct 31012379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 25341536 - 25341421
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  25341536 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccattcctgccctcattaa 25341437  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  25341436 tttttctaacccttct 25341421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 41064663 - 41064717
Alignment:
Q  19 aagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 73  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  41064663 aagctacaattcctagcttctgacttttctagaatcaattctacaccctcaattc 41064717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 37638825 - 37638937
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||| ||| |||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  37638825 ttcatatatttgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 37638924  T
Q  216 tcatcatgatgat 228  Q
    |||  ||||||||    
T  37638925 tcacaatgatgat 37638937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 10372677 - 10372565
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||| ||| |||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||| ||| |||||||| ||||||  ||| ||||    
T  10372677 ttcatataattgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgatttcaatctttatgaaaatgaaaatacaatcat 10372578  T
Q  216 tcatcatgatgat 228  Q
    ||| |||||||||    
T  10372577 tcaccatgatgat 10372565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 25970469 - 25970531
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    |||||| ||||||  || ||||||||||||||||||| |  ||||| ||||||||||||||||    
T  25970469 caaaagtaattctctttaaagctacaattcctagcttttggctttcttagaatcaattctaca 25970531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 3260930 - 3260815
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3260930 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 3260831  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  3260830 tttttctaacccttct 3260815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 29542533 - 29542418
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29542533 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 29542434  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  29542433 tttttctaacccttct 29542418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 42663470 - 42663585
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42663470 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 42663569  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  42663570 tttttctaacccttct 42663585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 14082927 - 14083029
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14082927 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 14083026  T
Q  101 ttt 103  Q
    |||    
T  14083027 ttt 14083029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 33115070 - 33115172
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33115070 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 33115169  T
Q  101 ttt 103  Q
    |||    
T  33115170 ttt 33115172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 27738524 - 27738412
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||  ||||    
T  27738524 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaattgatattgattttaatgtttatgaagatgaaagcacgatcat 27738425  T
Q  216 tcatcatgatgat 228  Q
    ||| |||||||||    
T  27738424 tcaccatgatgat 27738412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 33232579 - 33232691
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||  ||||    
T  33232579 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaagccagaaattgatattgattttaatgtttatgaagatgaaagcacgatcat 33232678  T
Q  216 tcatcatgatgat 228  Q
    ||| |||||||||    
T  33232679 tcaccatgatgat 33232691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 7071993 - 7071881
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||   |||    
T  7071993 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaattgatattaattttaatgtttatgaagatgaaagcacgaccat 7071894  T
Q  216 tcatcatgatgat 228  Q
    ||| |||||||||    
T  7071893 tcaccatgatgat 7071881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 22481637 - 22481750
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  22481637 ttcatatagttgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 22481736  T
Q  216 tcatcatgatgatg 229  Q
    ||| ||||||||||    
T  22481737 tcaccatgatgatg 22481750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 21022303 - 21022338
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaact 151  Q
    ||||||||||||||||||||||||||||||||||||    
T  21022303 ttcaaatagttgtcgcaacaatggctatacacaact 21022338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 2526320 - 2526379
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 60  Q
    ||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  2526320 caaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattct 2526379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 53729 - 53693
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagctt 37  Q
    ||||||||||| | |||||||||||||||||||||||    
T  53729 caaaagcaattatggttgaagctacaattcctagctt 53693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40979455 - 40979491
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagctt 37  Q
    ||||||||||||| | |||||||||||||||||||||    
T  40979455 caaaagcaattctggatgaagctacaattcctagctt 40979491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 24246654 - 24246769
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24246654 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 24246753  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  24246754 tttttctaacccttct 24246769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 31431127 - 31431012
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31431127 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 31431028  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  31431027 tttttctaacccttct 31431012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 18140488 - 18140603
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18140488 caaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 18140587  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  18140588 tttttctaacccttct 18140603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 24038153 - 24038038
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  24038153 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgtcctcattaa 24038054  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  24038053 tttttctaacccttct 24038038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39383049 - 39382934
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39383049 caaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 39382950  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  39382949 tttttctaacccttct 39382934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 49127701 - 49127816
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  49127701 caaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaa 49127800  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  49127801 tttttctaacccttct 49127816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 24036175 - 24036063
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24036175 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaatgcagaaaatgatatggattttaatgtttatgaagatgaaagcacaatcat 24036076  T
Q  216 tcatcatgatgat 228  Q
    |||||||||||||    
T  24036075 tcatcatgatgat 24036063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 56560630 - 56560742
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||  ||||    
T  56560630 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaattgatattgattttaatgtttatgaagatgaaagcacgatcat 56560729  T
Q  216 tcatcatgatgat 228  Q
    ||| |||||||||    
T  56560730 tcaccatgatgat 56560742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 52056954 - 52056842
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||| || ||| |||| | |||| ||||||||||||||||||||||||  ||||    
T  52056954 ttcaaatagttgtcgcaacaatggctatacacaaatttatctgaaggaagacaaaaattgattttgattctaatgtttatgaagatgaaagcacgttcat 52056855  T
Q  216 tcatcatgatgat 228  Q
    ||| |||||||||    
T  52056854 tcaccatgatgat 52056842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 51806037 - 51806127
Alignment:
Q  119 aaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcac 209  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||| ||| ||| |||||| ||||||||||||||||||||| |||||||    
T  51806037 aaatagtagccgcaacaatggctatgcacaactttattcgaaggaaagcaaaaattgatattgattttaatgtttatgaagataaaagcac 51806127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 16565661 - 16565774
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  16565661 ttcatatagttgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 16565760  T
Q  216 tcatcatgatgatg 229  Q
    ||| ||||||||||    
T  16565761 tcaccatgatgatg 16565774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 51834310 - 51834225
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 86  Q
    |||||||||||||   | ||||||||||||||| |||||  |||| |||||||||||| ||||| |||||||| || |||| ||||    
T  51834310 caaaagcaattctccataaagctacaattcctaacttctggcttttctagaatcaattatacactctcaattccatcaattccatc 51834225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16203156 - 16203097
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 60  Q
    ||||||||||| | ||||||||||||||||||||||| | | ||  ||||||||||||||    
T  16203156 caaaagcaattttggttgaagctacaattcctagcttttgagttgactagaatcaattct 16203097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 39732846 - 39732905
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 60  Q
    ||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  39732846 caaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 39732905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 50523933 - 50523874
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 60  Q
    ||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  50523933 caaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 50523874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 53404173 - 53404111
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 63  Q
    |||||||||||||  || ||||||||||||||||||| |   |||||||||||||||| ||||    
T  53404173 caaaagcaattctccttaaagctacaattcctagcttttggttttcctagaatcaattttaca 53404111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 22606422 - 22606362
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 61  Q
    ||||||||||| |   ||||||||||| ||||||||| | ||||||| |||||||||||||    
T  22606422 caaaagcaattattcgtgaagctacaaatcctagcttttgactttccaagaatcaattcta 22606362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 30019342 - 30019454
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30019342 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgatagcacagtcat 30019441  T
Q  216 tcatcatgatgat 228  Q
    |||||||||||||    
T  30019442 tcatcatgatgat 30019454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 30018887 - 30019002
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  30018887 caaaagcaattctagttgaagctacaattcctatcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgtcctcattaa 30018986  T
Q  101 tttttctaacccttct 116  Q
    ||||||||||||||||    
T  30018987 tttttctaacccttct 30019002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 21515664 - 21515552
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| ||||||||||||||||||||| |||||||  ||||    
T  21515664 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaagtcataaattgatattgattttaatgtttatgaagattaaagcacgatcat 21515565  T
Q  216 tcatcatgatgat 228  Q
    ||| |||||||||    
T  21515564 tcaccatgatgat 21515552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 16547578 - 16547691
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  16547578 ttcatatagttgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 16547677  T
Q  216 tcatcatgatgatg 229  Q
    ||| ||||||||||    
T  16547678 tcaccatgatgatg 16547691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 17830730 - 17830618
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||| |||||||||||||||||| | ||||||||||||||  ||||||  || ||||  ||| | ||||| | | |||||||||||||||  ||| ||||    
T  17830730 ttcatatagttgtcgcaacaatgacaatacacaactttattagaaggagtgctgaaatggatgttgatttcagtctttatgaagatgaaaatacaatcat 17830631  T
Q  216 tcatcatgatgat 228  Q
    ||| |||||||||    
T  17830630 tcaccatgatgat 17830618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4146848 - 4146907
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 60  Q
    ||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  4146848 caaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattct 4146907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 31746232 - 31746179
Alignment:
Q  20 agctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 73  Q
    |||||||||||||| ||| |  |||| ||||||||||||||||| |||||||||    
T  31746232 agctacaattcctaacttatggcttttctagaatcaattctacatcctcaattc 31746179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30134183 - 30134219
Alignment:
Q  1 caaaagcaattctagttgaagctacaattcctagctt 37  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  30134183 caaaagcaattctggttgaagctacaatttctagctt 30134219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 6563 - 6451
Alignment:
Q  116 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 215  Q
    |||| |||||||||||||||||| | ||||||||||||||  ||||||  |  ||||  ||| | ||||| ||| |||||||||||||||  ||| ||||    
T  6563 ttcatatagttgtcgcaacaatgacaatacacaactttattagaaggagtgttgaaatggatgttgatttcaatctttatgaagatgaaaatacaatcat 6464  T
Q  216 tcatcatgatgat 228  Q
    ||| |||||||||    
T  6463 tcaccatgatgat 6451  T

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