View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4463_low_4 (Length: 213)
Name: NF4463_low_4
Description: NF4463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4463_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 4114435 - 4114621
Alignment:
| Q |
25 |
tttaacaacataggagaagcaatatcattggttacacaatcataatcatat-------------tgaaaattttaatcacacattagcattagttaattt |
111 |
Q |
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| T |
4114435 |
tttaacaacataggagaagcaatatcattggttacacaatcataatcatatagaaaacaaatattgaaaattttaatcacacattagcattagttaattt |
4114534 |
T |
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| Q |
112 |
tgatctcattatttatgcttgcctatttccataaatatgataaactatgtgatttatatgtagatcatagtttaactgtgttgtaac |
198 |
Q |
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| T |
4114535 |
tgatctcattatttatgcttgcctatttccataaatatgataaactatgtgatttatatgtagatcaaagtttaactgtgttgtaac |
4114621 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 48296510 - 48296561
Alignment:
| Q |
30 |
caacataggagaagcaatatcattggttacacaatcataatcatattgaaaa |
81 |
Q |
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| T |
48296510 |
caacatagaagaaggaatatcattggttacacaatcatagtcataatgaaaa |
48296561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 48296565 - 48296674
Alignment:
| Q |
72 |
atattgaaaattttaatcacacattagcattagtta-----attttga--tctcattatttatgcttgcctatttccataaatatgataaactatgtgat |
164 |
Q |
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| T |
48296565 |
atattgaatattttaatcacacattagcaatagttagttttattttcacttctcattatttatccttatctattttcataaa----ataaactatgtgat |
48296660 |
T |
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| Q |
165 |
ttatatgtagatca |
178 |
Q |
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| T |
48296661 |
ttatatgtaaatca |
48296674 |
T |
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