View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4464-Insertion-1 (Length: 956)
Name: NF4464-Insertion-1
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-1 |
 | |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 832; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 832; E-Value: 0
Query Start/End: Original strand, 17 - 956
Target Start/End: Original strand, 30519496 - 30520431
Alignment:
| Q |
17 |
gtgtgtgtaaccatatcaaccaagaaaaagttgcataaaataggcactaatttgaatgatcactatcaaaattttaaattgcagttgcaaccgagattct |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30519496 |
gtgtgtgtaaccatatgaaccaagaaaaagttgcataaaataggcactaatttgaatgatcactatcaaaattttaaattgcagttgcaaccgagattct |
30519595 |
T |
|
| Q |
117 |
tgatattgtaaacaaatgttgcaaaattgcaaacgcaattacattgcaaataacatctgcaatttacgttgcaagcgtatgattttaaccacatgacttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
30519596 |
tgatattgtaaacaaatgttgcaaaattgcaaacgcaattacattgcaaataacatctgcaatttacgttacaagcgtatgattttaaccacatgacttg |
30519695 |
T |
|
| Q |
217 |
atactgtcacaaatattgtcgttgtcgcggtggttcacaaatgcattagtatgtaatatcgtactttgatttacaatacgtcaaaaatttgcatcaaaac |
316 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
30519696 |
atgctgtcacaaatattgtcgttgtcacggtggttcacaaatgcattagtatgcaatattgtactttgatttacaatacataaaaaatttgcatcaaaac |
30519795 |
T |
|
| Q |
317 |
actccttgtgtccaaaattggaagcaacaactctgtgtagattttggtcttgtgtataccttgatgtatataattcattcagtatctccaaatcactgaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30519796 |
actccttgtgtccaaaattggaagcaaccattctgtgtagattttggttttgtgtataccttgatgtatataattcattcagtatctccaaaccactgaa |
30519895 |
T |
|
| Q |
417 |
ctactcattcgtgaactagtaaattgttgtttaccttgatcttgtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatg |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30519896 |
ctactcattcgtgaactagtaaattgttgtttaccttgatattgtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatg |
30519995 |
T |
|
| Q |
517 |
ggtctagcataaggaccctcctagataaagccatttgaatcaaagcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtg |
616 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30519996 |
ggtctagcataaggaccctcctagctaaagccatttgaatcaaagcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtg |
30520095 |
T |
|
| Q |
617 |
actggaaagataagccaacccaatcacaagctccttctttaatgttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaaagtgaaa |
716 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
30520096 |
actggaaagataagccaacccaatcacaagctccttctttaatgttcatgttccacaaaaggcaaatattgtatgtcttttgaacctagtcaaagtgaaa |
30520195 |
T |
|
| Q |
717 |
gtgcaggtcatttctcaaagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaatgggtgaaagtaat |
816 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30520196 |
gtgtaggtcatttctcaaagaagattgatagataccaattcaattgccgtaattgtttttgttaaccttcaaattctcattgaaaatgggtgaaagtaat |
30520295 |
T |
|
| Q |
817 |
ctaaaattctattgaaaagtaagtacatattagccaaattaacgatgggttttagtcataatttgaattcaagctctctcaaacgatttttctttaattg |
916 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30520296 |
ctaaaattcgattgaaaagtaagtatatattagcc-aattaacgat-ggttttagtcataatttgaattcaagctctctcaaacgatttttctttaatt- |
30520392 |
T |
|
| Q |
917 |
gaagctcattaaacccagtctcggacacgcatcaatgtgc |
956 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
30520393 |
gaagctcatt-aacccagtctcagacacgcatcaatgtgc |
30520431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 460 - 824
Target Start/End: Original strand, 35633820 - 35634183
Alignment:
| Q |
460 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagataaagccatttgaatcaa |
559 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
35633820 |
gtatagggttacataattatatatatgctcttgtataaaactgcttgctgaaatatgggtcaagcataaggaccctcctagctaaagccatttgaatcaa |
35633919 |
T |
|
| Q |
560 |
agcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagctccttctttaat |
659 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35633920 |
agcaa-gtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagcaccttctttaat |
35634018 |
T |
|
| Q |
660 |
gttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaaagtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaa |
759 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35634019 |
gttcatgttccacaaaaggcaaatattgtgtgtctattgaacctagtcaaagcgaaagtgcaggtcatttct--aagaagattgatagataccaattcaa |
35634116 |
T |
|
| Q |
760 |
ttgccgta-attgtttttgttaaccttcaaattctcattgaaaat-gggtgaaagtaatctaaaatt |
824 |
Q |
| |
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||||||| || ||||| ||||||||||||||||| |||||||| |||| | |||||||||||||| |
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|
| T |
35634117 |
atgccgtagtttttttttcttaaccttcaaattctcgttgaaaatggggtcatagtaatctaaaatt |
35634183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 460 - 824
Target Start/End: Complemental strand, 48755063 - 48754701
Alignment:
| Q |
460 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagataaagccatttgaatcaa |
559 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| | |||||||||||||||| || |||||||||||||||||| |
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|
| T |
48755063 |
gtatagggtaacataattatatatatgctcttgtataaaactgcttgccgaaatatgggccaagcataaggaccctcccagctaaagccatttgaatcaa |
48754964 |
T |
|
| Q |
560 |
agcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagctccttctttaat |
659 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
48754963 |
agcaa-gtgttgttatcgtactaaatagaaaatcattatgtctcatgtgtgagtgtgactcgaaagataagccaacccaatcacaagcaccttctttaat |
48754865 |
T |
|
| Q |
660 |
gttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaaagtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaa |
759 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
48754864 |
gttcatgttccacaaaaggcaaatattgtgtgtctattgaacctagtcaaagcgaaagtgcaggtcatttct--aagaagattgatagataccaattcaa |
48754767 |
T |
|
| Q |
760 |
ttgccgtaattgtttttgttaaccttcaaattctcattgaaaat-gggtgaaagtaatctaaaatt |
824 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| |||||||| |||| | |||||||||||||| |
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|
| T |
48754766 |
atgccgtaattttttttcttaaccttcaaattctcgttgaaaatggggtcatagtaatctaaaatt |
48754701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 460 - 806
Target Start/End: Original strand, 42247350 - 42247691
Alignment:
| Q |
460 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagataaagccatttgaatcaa |
559 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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|
| T |
42247350 |
gtatagggttacataattatatatatgctcttgtataaaactgcttgctgaaatatgggtcaagcataaggaccctcctagctaaagccatttgaatcaa |
42247449 |
T |
|
| Q |
560 |
agcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagctccttctttaat |
659 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |
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|
| T |
42247450 |
agcaa-gtgatgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgaccggaaagataagccaacctaatcacaagcaccttctttaat |
42247548 |
T |
|
| Q |
660 |
gttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaaagtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaa |
759 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
42247549 |
gttcatgttccacaaaaggcaaatattgtgtgtctattgaacctagtcaaagcgaaagtgcaggtcatttct--aagaagattgatagataccaattcaa |
42247646 |
T |
|
| Q |
760 |
ttgccgtaattgtttttgttaaccttcaaattctcattgaaaatggg |
806 |
Q |
| |
|
||| | || ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
42247647 |
atgcgtt--ttttttttcttaaccttcaaattctcgttgaaaatggg |
42247691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 460 - 824
Target Start/End: Original strand, 45384840 - 45385200
Alignment:
| Q |
460 |
gtatagggttacataattatatatatgcccttgtataaaactgcttgctaaaatatgggtctagcataaggaccctcctagataaagccatttgaatcaa |
559 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
45384840 |
gtatagggtaacataattatatatatgctcttgtaaaaaactgcttgctgaaatatgggtcaagcataaggacc-tcctagctaaagccatttgaatcaa |
45384938 |
T |
|
| Q |
560 |
agcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgtgagtgtgactggaaagataagccaacccaatcacaagctccttctttaat |
659 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45384939 |
agcaa-gtgttgttatcgtactaaagagaaaatcattatgtctcat-tgtgagtgtgactcgaaagataagccaacccaatcacaagcaccttctttaat |
45385036 |
T |
|
| Q |
660 |
gttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaaagtgaaagtgcaggtcatttctcaaagaagattgatagataccaattcaa |
759 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45385037 |
gttcatgttccacaaaaggcgaatattgtgtgtctattgaacctagtcaaagcgaaagtgcatgtcatttct--aagaagattgatagataccaattcaa |
45385134 |
T |
|
| Q |
760 |
ttgccgtaattgtttttgttaaccttcaaattctcattgaaaat-gggtgaaagtaatctaaaatt |
824 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||||| |||||||| |||| | |||||||||||||| |
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|
| T |
45385135 |
ataccgtaattttttttcttaaccttcaaattctcgttgaaaatggggtcatagtaatctaaaatt |
45385200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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